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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.225417 (31 seq.)
>W1711135794
LUZM01000061
Bacteroidota
Bacteroidales bacterium Bact_21 [LUZM]
1488
1415
-
Ala
GGC
[ENA]
¡û
>WENV181169057
OEIV010000185
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
31913
31839
-
Ala
GGC
[ENA]
¡û
>WENV183092940
OLLO01000630
[OLLO] soil metagenome; soil
261
335
+
Ala
GGC
[ENA]
¡û
>WENV183740855
PJUF01013541
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
631
555
-
Ala
GGC
[ENA]
¡û
>WENV170577051
FRDC01002852
[FRDC] freshwater metagenome; water
36192
36118
-
Ala
GGC
[ENA]
¡û
>WENV170981551
MWVT01128386
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
143
217
+
Ala
GGC
[ENA]
¡û
>WENV170983375
MWVV01027005
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
544
620
+
Ala
GGC
[ENA]
¡û
>WENV170989182
MWVZ01001446
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
3819
3745
-
Ala
GGC
[ENA]
¡û
>WENV170989318
MWVZ01012344
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
263
189
-
Ala
GGC
[ENA]
¡û
>WENV170992185
MWWB01005196
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
857
931
+
Ala
GGC
[ENA]
¡û
>WENV170992852
MWWB01109663
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
383
457
+
Ala
GGC
[ENA]
¡û
>WENV170993080
MWWB01176291
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
244
320
+
Ala
GGC
[ENA]
¡û
>WENV170994483
MWWE01000943
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
247
321
+
Ala
GGC
[ENA]
¡û
>WENV170994747
MWWE01042475
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
641
567
-
Ala
GGC
[ENA]
¡û
>WENV170995243
MWWE01220775
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
214
288
+
Ala
GGC
[ENA]
¡û
>WENV170995438
MWWF01007765
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
1631
1707
+
Ala
GGC
[ENA]
¡û
>WENV170995852
MWWF01074770
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
507
583
+
Ala
GGC
[ENA]
¡û
>WENV170997172
MWWG01042322
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
565
639
+
Ala
GGC
[ENA]
¡û
>WENV170998059
MWWI01005647
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
1329
1255
-
Ala
GGC
[ENA]
¡û
>W2011578082
SGXA01000002
Bacteroidota
Pseudobacter ginsenosidimutans DSM 18116 [SGXA]
288314
288240
-
Ala
GGC
[ENA]
¡û
>W2012002612
VEHN01000003
Bacteroidota
Filimonas lacunae DE0057 [VEHN]
37352
37278
-
Ala
GGC
[ENA]
¡û
>W2110597228
JAHEAH010000003
Bacteroidota
Flavihumibacter sp. IMCC34838 [JAHEAH]
488881
488807
-
Ala
GGC
[ENA]
¡û
>C211401701
CP083388
Bacteroidota
Ferruginibacter sp. KIS38-8 [CP083388]
3010294
3010368
+
Ala
GGC
-
¡û
>C231619814
CP119311
Bacteroidota
Pseudobacter sp. [CP119311]
2300535
2300609
+
Ala
GGC
-
¡û
>C241065884
CP042431
Bacteroidota
Pseudobacter ginsenosidimutans Gsoil 221 [CP042431]
2817679
2817753
+
Ala
GGC
-
¡û
>C241066089
CP042435
Bacteroidota
Panacibacter ginsenosidivorans Gsoil1550 [CP042435]
870388
870314
-
Ala
GGC
-
¡û
>W1511308885
JPOS01000039
Bacteroidota
Phaeodactylibacter xiamenensis KD52 [JPOS]
97818
97742
-
Ala
GGC
[ENA]
¡û
>C161034894
CP011390
Bacteroidota
Flavisolibacter tropicus LCS9 [CP011390]
2218854
2218778
-
Ala
GGC
[Ensembl]
¡û
>W1610946914
LUZM01000061
Bacteroidota
Bacteroidales bacterium Bact_21 [LUZM]
1488
1415
-
Ala
GGC
[ENA]
¡û
>W1710512688
FMZO01000023
Bacteroidota
Niabella drilacis [FMZO]
6610
6534
-
Ala
GGC
[ENA]
¡û
>W1710573651
FOXQ01000005
Bacteroidota
Parafilimonas terrae [FOXQ]
287942
287866
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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