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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.225567 (136 seq.)
>W1711066318
LSCT01000022
Bacteroidota
Bacteroidales bacterium KA00344 [LSCT]
208
134
-
Ala
GGC
[ENA]
¡û
>W1711110241
LTVI01000305
Bacteroidota
Prevotella sp. HMSC073D09 [LTVI]
121
47
-
Ala
GGC
[ENA]
¡û
>WENV180010032
FLSC01243143
[FLSC] metagenome; saliva
253
179
-
Ala
GGC
[ENA]
¡û
>WENV180118374
OARX01060257
[OARX] human gut metagenome; ENVO:feces
145
71
-
Ala
GGC
[ENA]
¡û
>WENV180154312
OAUS01108329
[OAUS] human gut metagenome; faeces
145
71
-
Ala
GGC
[ENA]
¡û
>WENV180198369
OBAC01050267
[OBAC] human gut metagenome; ENVO:feces
136
62
-
Ala
GGC
[ENA]
¡û
>WENV180199027
OBAD01089483
[OBAD] human gut metagenome; ENVO:feces
2
76
+
Ala
GGC
[ENA]
¡û
>WENV180230520
OBCL01031440
[OBCL] human gut metagenome; human gut
137
211
+
Ala
GGC
[ENA]
¡û
>WENV180282299
OBIB01022193
[OBIB] human gut metagenome; human gut
310
236
-
Ala
GGC
[ENA]
¡û
>WENV180286947
OBII01047173
[OBII] human gut metagenome; feces
174
248
+
Ala
GGC
[ENA]
¡û
>WENV180340795
OBLI01046138
[OBLI] pig gut metagenome; faeces
1243
1169
-
Ala
GGC
[ENA]
¡û
>WENV180341626
OBLI01181190
[OBLI] pig gut metagenome; faeces
199
125
-
Ala
GGC
[ENA]
¡û
>WENV180391311
OBPM01084062
[OBPM] marine metagenome; ENVO:00002010
69
143
+
Ala
GGC
[ENA]
¡û
>WENV180402063
OBRN01063292
[OBRN] human gut metagenome; ENVO:feces
82
8
-
Ala
GGC
[ENA]
¡û
>WENV180403050
OBRR01004191
[OBRR] human gut metagenome; ENVO:feces
145
219
+
Ala
GGC
[ENA]
¡û
>WENV180414340
OBVC01027237
[OBVC] human gut metagenome; faeces
236
311
+
Ala
GGC
[ENA]
¡û
>W141042565
AMEP01000006
Bacteroidota
Hoylesella saccharolytica F0055 [AMEP]
1767
1693
-
Ala
GGC
[ENA]
¡û
>WENV180547673
OCIU01076847
[OCIU] human gut metagenome; human gut
251
325
+
Ala
GGC
[ENA]
¡û
>WENV180562649
OCLB01037370
[OCLB] human gut metagenome; human gut
234
310
+
Ala
GGC
[ENA]
¡û
>WENV180565315
OCLF01144388
[OCLF] human gut metagenome; human gut
76
2
-
Ala
GGC
[ENA]
¡û
>WENV180566094
OCLH01060631
[OCLH] human gut metagenome; human gut
141
65
-
Ala
GGC
[ENA]
¡û
>WENV180567726
OCLL01191053
[OCLL] human gut metagenome; human gut
75
1
-
Ala
GGC
[ENA]
¡û
>WENV180662458
OCVV011080181
[OCVV] gut metagenome; gut
229
155
-
Ala
GGC
[ENA]
¡û
>WENV180662460
OCVV011080181
[OCVV] gut metagenome; gut
229
155
-
Ala
GGC
[ENA]
¡û
>WENV180663146
OCVV011110000
[OCVV] gut metagenome; gut
191
117
-
Ala
GGC
[ENA]
¡û
>WENV180663148
OCVV011110000
[OCVV] gut metagenome; gut
191
117
-
Ala
GGC
[ENA]
¡û
>WENV180667860
OCVV011245147
[OCVV] gut metagenome; gut
129
203
+
Ala
GGC
[ENA]
¡û
>WENV180667862
OCVV011245147
[OCVV] gut metagenome; gut
129
203
+
Ala
GGC
[ENA]
¡û
>WENV180677656
OCVV011755401
[OCVV] gut metagenome; gut
92
166
+
Ala
GGC
[ENA]
¡û
>WENV180677658
OCVV011755401
[OCVV] gut metagenome; gut
92
166
+
Ala
GGC
[ENA]
¡û
>WENV180681714
OCVV012793735
[OCVV] gut metagenome; gut
135
211
+
Ala
GGC
[ENA]
¡û
>WENV180681716
OCVV012793735
[OCVV] gut metagenome; gut
135
211
+
Ala
GGC
[ENA]
¡û
>WENV180683656
OCVV012844437
[OCVV] gut metagenome; gut
490
416
-
Ala
GGC
[ENA]
¡û
>WENV180683658
OCVV012844437
[OCVV] gut metagenome; gut
490
416
-
Ala
GGC
[ENA]
¡û
>WENV180684451
OCVV012857547
[OCVV] gut metagenome; gut
202
276
+
Ala
GGC
[ENA]
¡û
>WENV180684452
OCVV012857547
[OCVV] gut metagenome; gut
202
276
+
Ala
GGC
[ENA]
¡û
>WENV180685896
OCVV012878595
[OCVV] gut metagenome; gut
145134
145208
+
Ala
GGC
[ENA]
¡û
>WENV180685898
OCVV012878595
[OCVV] gut metagenome; gut
145134
145208
+
Ala
GGC
[ENA]
¡û
>WENV180728911
ODGU01121165
[ODGU] human metagenome; G_DNA_Supragingival plaque
447
521
+
Ala
GGC
[ENA]
¡û
>WENV180731899
ODGW01032500
[ODGW] human metagenome; G_DNA_Supragingival plaque
376
302
-
Ala
GGC
[ENA]
¡û
>WENV180751516
ODHS01063384
[ODHS] human metagenome; G_DNA_Supragingival plaque
141
67
-
Ala
GGC
[ENA]
¡û
>WENV180765237
ODIB01050353
[ODIB] human metagenome; G_DNA_Supragingival plaque
145
219
+
Ala
GGC
[ENA]
¡û
>WENV180798389
ODJB01444074
[ODJB] human metagenome; G_DNA_Supragingival plaque
76
2
-
Ala
GGC
[ENA]
¡û
>WENV180804965
ODJG01029057
[ODJG] human metagenome; G_DNA_Supragingival plaque
986
912
-
Ala
GGC
[ENA]
¡û
>WENV180810484
ODJK01347181
[ODJK] human metagenome; G_DNA_Subgingival plaque
17
91
+
Ala
GGC
[ENA]
¡û
>WENV180833382
ODKC01039980
[ODKC] human metagenome; G_DNA_Supragingival plaque
182
108
-
Ala
GGC
[ENA]
¡û
>WENV180847876
ODKT01227079
[ODKT] human metagenome; G_DNA_Supragingival plaque
160
86
-
Ala
GGC
[ENA]
¡û
>WENV180860340
ODLD01049731
[ODLD] human metagenome; G_DNA_Supragingival plaque
76
2
-
Ala
GGC
[ENA]
¡û
>WENV180924897
ODTK01021702
[ODTK] human metagenome; G_DNA_Supragingival plaque
1019
945
-
Ala
GGC
[ENA]
¡û
>WENV180924949
ODTK01026479
[ODTK] human metagenome; G_DNA_Supragingival plaque
132
206
+
Ala
GGC
[ENA]
¡û
>WENV180950183
ODUG01103917
[ODUG] human metagenome; G_DNA_Tongue dorsum
143
69
-
Ala
GGC
[ENA]
¡û
>WENV180952048
ODUH01105633
[ODUH] human metagenome; G_DNA_Subgingival plaque
156
230
+
Ala
GGC
[ENA]
¡û
>WENV180987765
ODVK01124223
[ODVK] human metagenome; G_DNA_Supragingival plaque
193
267
+
Ala
GGC
[ENA]
¡û
>WENV181064292
ODYP01018206
[ODYP] human metagenome; G_DNA_Supragingival plaque
1817
1743
-
Ala
GGC
[ENA]
¡û
>WENV181067900
ODZI01069438
[ODZI] human metagenome; G_DNA_Supragingival plaque
504
578
+
Ala
GGC
[ENA]
¡û
>WENV181077981
OEAP01260783
[OEAP] human metagenome; G_DNA_Supragingival plaque
76
2
-
Ala
GGC
[ENA]
¡û
>WENV181083795
OEAV01024303
[OEAV] human metagenome; G_DNA_Supragingival plaque
502
576
+
Ala
GGC
[ENA]
¡û
>WENV181137837
OEGJ01033702
[OEGJ] human metagenome; G_DNA_Supragingival plaque
638
712
+
Ala
GGC
[ENA]
¡û
>WENV181151257
OEHW01031404
[OEHW] human metagenome; G_DNA_Tongue dorsum
1085
1011
-
Ala
GGC
[ENA]
¡û
>WENV181177752
OEJS01014592
[OEJS] human metagenome; G_DNA_Supragingival plaque
443
518
+
Ala
GGC
[ENA]
¡û
>WENV181182782
OEJV01046328
[OEJV] human metagenome; G_DNA_Supragingival plaque
698
624
-
Ala
GGC
[ENA]
¡û
>WENV181182826
OEJV01053366
[OEJV] human metagenome; G_DNA_Supragingival plaque
184
110
-
Ala
GGC
[ENA]
¡û
>WENV181226893
OFDN01000309
[OFDN] hot springs metagenome; Water
8201
8127
-
Ala
GGC
[ENA]
¡û
>WENV181308128
OFIS01000280
[OFIS] sludge metagenome; sludge
13224
13150
-
Ala
GGC
[ENA]
¡û
>WENV181436611
OGDF01023548
[OGDF] human gut metagenome; human gut
2096
2022
-
Ala
GGC
[ENA]
¡û
>WENV181458253
OGEJ01003826
[OGEJ] metagenome; Human gut stool
2924
2850
-
Ala
GGC
[ENA]
¡û
>WENV181472696
OGEZ01011932
[OGEZ] metagenome; Human gut stool
217
292
+
Ala
GGC
[ENA]
¡û
>WENV181472902
OGFA01003417
[OGFA] metagenome; Human gut stool
300
374
+
Ala
GGC
[ENA]
¡û
>WENV181489115
OGFR01022548
[OGFR] metagenome; Human gut stool
223
297
+
Ala
GGC
[ENA]
¡û
>WENV181850098
OGWC01001102
[OGWC] freshwater metagenome; freshwater
2662
2736
+
Ala
GGC
[ENA]
¡û
>WENV182007155
OHBG01022174
[OHBG] human gut metagenome; feces
609
683
+
Ala
GGC
[ENA]
¡û
>WENV182140460
OHKQ01006016
[OHKQ] human gut metagenome; feces
2234
2160
-
Ala
GGC
[ENA]
¡û
>WENV182151899
OHLK01002979
[OHLK] human gut metagenome; feces
160
234
+
Ala
GGC
[ENA]
¡û
>WENV182263006
OHTO01002972
[OHTO] human gut metagenome; feces
2078
2004
-
Ala
GGC
[ENA]
¡û
>W141226860
BAKN01000065
Bacteroidota
Hoylesella saccharolytica JCM 17484 [BAKN]
1099
1025
-
Ala
GGC
[ENA]
¡û
>WENV182318946
OHYG01000374
[OHYG] human gut metagenome; feces
1075
1001
-
Ala
GGC
[ENA]
¡û
>WENV182342964
OIAK01000094
[OIAK] human gut metagenome; feces
807
733
-
Ala
GGC
[ENA]
¡û
>WENV182391649
OIEF01026886
[OIEF] human gut metagenome; human gut
47
121
+
Ala
GGC
[ENA]
¡û
>WENV182433592
OIIU01000611
[OIIU] human gut metagenome; human gut
208
284
+
Ala
GGC
[ENA]
¡û
>W141243307
CAJK01000390
Bacteroidota
Prevotella conceptionensis conceptionensis 9403948 [CAJK]
158
84
-
Ala
GGC
[ENA]
¡û
>WENV182482347
OIRE01000927
[OIRE] human gut metagenome; human gut
2038
2112
+
Ala
GGC
[ENA]
¡û
>WENV182483410
OIRI01000817
[OIRI] human gut metagenome; human gut
1473
1547
+
Ala
GGC
[ENA]
¡û
>WENV182666387
OJNH01020120
[OJNH] human gut metagenome; feces
2228
2154
-
Ala
GGC
[ENA]
¡û
>WENV183028890
OLFV01012087
[OLFV] human gut metagenome; faeces
165
239
+
Ala
GGC
[ENA]
¡û
>WENV183045777
OLGE01024780
[OLGE] human gut metagenome; faeces
1977
1903
-
Ala
GGC
[ENA]
¡û
>WENV183067453
OLIM01005416
[OLIM] metagenome; faeces
1064
989
-
Ala
GGC
[ENA]
¡û
>WENV183552581
OOBJ01013576
[OOBJ] human gut metagenome; human gut
165
239
+
Ala
GGC
[ENA]
¡û
>WENV170005629
AMCI01009063
[AMCI] gut metagenome; fecal sample from gut
123
197
+
Ala
GGC
[ENA]
¡û
>WENV170020791
BBPE01029364
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
773
699
-
Ala
GGC
[ENA]
¡û
>WENV170980765
MWVT01000607
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
2844
2918
+
Ala
GGC
[ENA]
¡û
>WENV170982311
MWVU01060785
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
68
144
+
Ala
GGC
[ENA]
¡û
>WENV170982485
MWVU01115260
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
413
337
-
Ala
GGC
[ENA]
¡û
>WENV170982609
MWVU01163943
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
275
351
+
Ala
GGC
[ENA]
¡û
>WENV170982681
MWVU01193276
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
311
235
-
Ala
GGC
[ENA]
¡û
>WENV170989221
MWVZ01004764
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
2438
2364
-
Ala
GGC
[ENA]
¡û
>WENV170989330
MWVZ01014220
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
1292
1366
+
Ala
GGC
[ENA]
¡û
>WENV170992431
MWWB01028395
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
757
831
+
Ala
GGC
[ENA]
¡û
>WENV170993387
MWWB01284590
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
174
248
+
Ala
GGC
[ENA]
¡û
>WENV170996463
MWWF01280316
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
103
179
+
Ala
GGC
[ENA]
¡û
>WENV170996881
MWWG01001610
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
2589
2513
-
Ala
GGC
[ENA]
¡û
>WENV170997585
MWWG01197667
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
265
191
-
Ala
GGC
[ENA]
¡û
>WENV170999407
MWWK01050156
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
243
319
+
Ala
GGC
[ENA]
¡û
>W1910228227
FNMR01000017
Bacteroidota
Prevotellamassilia timonensis Marseille-P2831 [FNMR]
290346
290420
+
Ala
GGC
[ENA]
¡û
>W1911136614
NOVE01000128
Bacteroidota
Prevotella sp. 885 [NOVE]
278
354
+
Ala
GGC
[ENA]
¡û
>W1911154712
NPJK01000068
Bacteroidota
Prevotella sp. P5-64 [NPJK]
217
143
-
Ala
GGC
[ENA]
¡û
>W1911741137
QUZZ01000001
Bacteroidota
Taibaiella sp. F-4 [QUZZ]
337979
338055
+
Ala
GGC
[ENA]
¡û
>W1810400465
PYGD01000001
Bacteroidota
Taibaiella chishuiensis CGMCC 1.12700 [PYGD]
173752
173826
+
Ala
GGC
[ENA]
¡û
>W1810682110
QKTW01000007
Bacteroidota
Taibaiella soli R1-15 [QKTW]
44994
45068
+
Ala
GGC
[ENA]
¡û
>W2010284176
CABMKE010000016
Bacteroidota
Prevotellaceae bacterium [CABMKE]
290346
290420
+
Ala
GGC
[ENA]
¡û
>W2010382203
FNMR01000017
Bacteroidota
Prevotellamassilia timonensis Marseille-P2831 [FNMR]
290346
290420
+
Ala
GGC
[ENA]
¡û
>W2011013095
NOVE01000128
Bacteroidota
Prevotella sp. 885 [NOVE]
278
354
+
Ala
GGC
[ENA]
¡û
>W2011024577
NPJK01000068
Bacteroidota
Prevotella sp. P5-64 [NPJK]
217
143
-
Ala
GGC
[ENA]
¡û
>W2011306519
QUZZ01000001
Bacteroidota
Taibaiella sp. F-4 [QUZZ]
337979
338055
+
Ala
GGC
[ENA]
¡û
>W2011836082
UGTJ01000001
Bacteroidota
Prevotella buccae NCTC13063 [UGTJ]
13708
13783
+
Ala
GGC
[ENA]
¡û
>W2011836083
UGTJ01000001
Bacteroidota
Prevotella buccae NCTC13063 [UGTJ]
71559
71634
+
Ala
GGC
[ENA]
¡û
>ENV09002434
ADGC01001807
Wallaby gut metagenome MeugComb_C1
145
71
-
Ala
GGC
[ENA]
¡û
>ENV09002455
ADGC01002494
Wallaby gut metagenome MeugComb_C1
999
925
-
Ala
GGC
[ENA]
¡û
>W2110073060
BPTT01000001
Bacteroidota
Prevotella ruminicola JCM 8259 [BPTT]
682729
682803
+
Ala
GGC
[ENA]
¡û
>W2110073067
BPTT01000001
Bacteroidota
Prevotella ruminicola JCM 8259 [BPTT]
1447830
1447904
+
Ala
GGC
[ENA]
¡û
>W10103551
ACRB01000262
Bacteroidota
Segatella buccae D17 [ACRB]
165
241
+
Ala
GGC
[ENA]
¡û
>C201182449
CP046566
Bacteroidota
Flavihumibacter sp. SB-02 [CP046566]
1838355
1838429
+
Ala
GGC
-
¡û
>C211297630
CP071890
Bacteroidota
Prevotella ruminicola KHP1 [CP071890]
754108
754034
-
Ala
GGC
-
¡û
>C231305976
CP091786
Bacteroidota
Prevotella sp. E9-3 [CP091786]
2697936
2697862
-
Ala
GGC
-
¡û
>C231306022
CP091787
Bacteroidota
Prevotella sp. E13-17 [CP091787]
2141193
2141119
-
Ala
GGC
-
¡û
>C231306100
CP091790
Bacteroidota
Prevotella sp. E13-3 [CP091790]
1299777
1299851
+
Ala
GGC
-
¡û
>C231306200
CP091792
Bacteroidota
Prevotella sp. E1-9 [CP091792]
1185089
1185163
+
Ala
GGC
-
¡û
>C231306252
CP091793
Bacteroidota
Prevotella sp. E1-a [CP091793]
1185084
1185158
+
Ala
GGC
-
¡û
>C231306327
CP091794
Bacteroidota
Prevotella sp. E15-14 [CP091794]
2316451
2316377
-
Ala
GGC
-
¡û
>C10110393
CP002006
Bacteroidota
Xylanibacter ruminicola 23 Bryant 23 [CP002006]
752389
752465
+
Ala
GGC
[Ensembl]
¡û
>C10110408
CP002006
Bacteroidota
Xylanibacter ruminicola 23 Bryant 23 [CP002006]
3607602
3607678
+
Ala
GGC
[Ensembl]
¡û
>W11103707
ACRB01000262
Bacteroidota
Segatella buccae D17 [ACRB]
165
241
+
Ala
GGC
[ENA]
¡û
>W1511472166
JVYX01000617
Bacteroidota
Segatella buccae 1205_PDEN [JVYX]
95
171
+
Ala
GGC
[ENA]
¡û
>W1511508538
JXQH01000041
Bacteroidota
Prevotella pectinovora P4-65 [JXQH]
448
374
-
Ala
GGC
[ENA]
¡û
>W1511508665
JXQK01000029
Bacteroidota
Prevotella pectinovora P5-119 [JXQK]
370
444
+
Ala
GGC
[ENA]
¡û
>W11142569
AEPD01000064
Bacteroidota
Segatella buccae ATCC 33574 [AEPD]
698
622
-
Ala
GGC
[ENA]
¡û
>W1610906888
LSCT01000022
Bacteroidota
Bacteroidales bacterium KA00344 [LSCT]
208
134
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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