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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.225756 (31 seq.)
>W1711491963
MKJZ01000038
Actinomycetota
Serinicoccus sp. CUA-874 [MKJZ]
157636
157560
-
Met
CAT
[ENA]
¡û
>W1711492018
MKKB01000088
Actinomycetota
Kytococcus sp. CUA-901 [MKKB]
46055
46131
+
Met
CAT
[ENA]
¡û
>W1711492239
MKKF01000033
Actinomycetota
Serinicoccus sp. CNJ-927 [MKKF]
52638
52714
+
Met
CAT
[ENA]
¡û
>W1711503108
MKTH01000024
Actinomycetota
Cellulomonas sp. 73-92 [MKTH]
101107
101031
-
Met
CAT
[ENA]
¡û
>W131217172
ATWM01000008
Actinomycetota
Serinicoccus marinus DSM 15273 [ATWM]
59651
59727
+
Met
CAT
[ENA]
¡û
>C171034693
CP014989
Actinomycetota
Serinicoccus hydrothermalis JLT9 [CP014989]
119448
119372
-
Met
CAT
-
¡û
>W141152995
AXCW01000013
Actinomycetota
Actinotalea ferrariae CF5-4 [AXCW]
9284
9360
+
Met
CAT
[ENA]
¡û
>W141279312
JAGF01000001
Actinomycetota
Cellulomonas sp. KRMCY2 [JAGF]
3284761
3284837
+
Met
CAT
[ENA]
¡û
>WENV183750203
PPFU01271478
[PPFU] hypolithon metagenome; Antarctic Hypolithon
587
512
-
Ile2
CAT
[ENA]
¢þ
>C181062000
CP022316
Actinomycetota
Brachybacterium avium VR2415 [CP022316]
203946
204020
+
Met
CAT
-
¡û
>C181084694
CP023564
Actinomycetota
Brachybacterium ginsengisoli DCY80 [CP023564]
1881535
1881460
-
Met
CAT
-
¡û
>C181197188
CP031229
Actinomycetota
Ornithinimicrobium avium AMA3305 [CP031229]
331559
331484
-
Met
CAT
-
¡û
>C191183668
CP040887
Actinomycetota
Serinicoccus chungangensis CCUG 59777 [CP040887]
1940488
1940562
+
Met
CAT
-
¡û
>W09109337
ABUD01000034
Actinomycetota
Kytococcus sedentarius DSM 20547 [ABUD]
9360
9284
-
Met
CAT
[ENA]
¡û
>W1910181155
BJLR01000030
Actinomycetota
Cellulomonas cellasea NBRC 3753 [BJLR]
99494
99419
-
Met
CAT
[ENA]
¡û
>W1810189368
PKIZ01000008
Actinomycetota
Kytococcus schroeteri UMB1298 [PKIZ]
47568
47494
-
Met
CAT
[ENA]
¡û
>W1810697554
QLVD01000010
Actinomycetota
Ornithinimicrobium murale DSM 22056 [QLVD]
60104
60178
+
Met
CAT
[ENA]
¡û
>W1510001123
AXCX01000005
Actinomycetota
Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 [AXCX]
14135
14059
-
Met
CAT
[ENA]
¡û
>W1510015593
BBRD01000001
Actinomycetota
Demequina aestuarii NBRC 106260 [BBRD]
1023305
1023379
+
Met
CAT
[ENA]
¡û
>C10108047
CP001686
Actinomycetota
Kytococcus sedentarius DSM 20547 [CP001686]
1221760
1221836
+
Met
CAT
[Ensembl]
¡û
>W11177005
AFYF01000019
Actinomycetota
Serinicoccus profundi MCCC 1A05965 [AFYF]
7073
6999
-
Met
CAT
[ENA]
¡û
>W11177855
AGBX01000007
Actinomycetota
Brachybacterium squillarum M-6-3 [AGBX]
340304
340380
+
Met
CAT
[ENA]
¡û
>W1610029591
AXCY01000043
Actinomycetota
Cellulomonas carbonis T26 [AXCY]
15035
14959
-
Met
CAT
[ENA]
¡û
>W1610029614
AXCZ01000006
Actinomycetota
Cellulomonas bogoriensis 69B4 = DSM 16987 [AXCZ]
26455
26531
+
Met
CAT
[ENA]
¡û
>W1610029804
AXNT01000011
Actinomycetota
Cellulomonas cellasea DSM 20118 [AXNT]
29045
28969
-
Met
CAT
[ENA]
¡û
>W1610207213
FCOT01000013
Actinomycetota
Cellulomonas timonensis SN7 [FCOT]
295654
295730
+
Met
CAT
[ENA]
¡û
>W1710026961
AXCY01000043
Actinomycetota
Cellulomonas carbonis T26 [AXCY]
15035
14959
-
Met
CAT
[ENA]
¡û
>W1710026984
AXCZ01000006
Actinomycetota
Cellulomonas bogoriensis 69B4 = DSM 16987 [AXCZ]
26455
26531
+
Met
CAT
[ENA]
¡û
>W1710027132
AXNT01000011
Actinomycetota
Cellulomonas cellasea DSM 20118 [AXNT]
29045
28969
-
Met
CAT
[ENA]
¡û
>W1710207907
FCOT01000013
Actinomycetota
Cellulomonas timonensis SN7 [FCOT]
295654
295730
+
Met
CAT
[ENA]
¡û
>W1710610317
FYEZ01000002
Actinomycetota
Kytococcus aerolatus [FYEZ]
462909
462983
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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