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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.227046 (33 seq.)
>W1711414288
MGZH01000173
Thermodesulfobacteriota
Geobacteraceae bacterium GWB2_52_12 [MGZH]
5148
5072
-
Arg
CCT
[ENA]
¡û
>W1711414332
MGZJ01000032
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_53_11 [MGZJ]
157056
156980
-
Arg
CCT
[ENA]
¡û
>W1711414378
MGZK01000059
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_55_20 [MGZK]
13130
13054
-
Arg
CCT
[ENA]
¡û
>W1711414449
MGZM01000065
Thermodesulfobacteriota
Geobacteraceae bacterium GWF2_54_21 [MGZM]
19155
19079
-
Arg
CCT
[ENA]
¡û
>C010257
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
2956615
2956539
-
Arg
CCT
[Ensembl]
¡û
>w024813
AAZA01000042
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
20038
19960
-
Arg
CCT
[ENA]
¡û
>w018120
AASH01000056
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [AASH]
17122
17044
-
Arg
CCT
[ENA]
¡û
>WENV180251702
OBEQ010387354
[OBEQ] groundwater metagenome; groundwater
3041
3117
+
Arg
CCT
[ENA]
¡û
>WENV180315414
OBKH01086272
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
298
222
-
Arg
CCT
[ENA]
¡û
>WENV170004273
AGTN01623408
[AGTN] bioreactor metagenome; poplar biomass
318
394
+
Arg
CCT
[ENA]
¡û
>WENV170006898
AMWB02062588
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
327
251
-
Arg
CCT
[ENA]
¡û
>WENV170660166
JXWT01018250
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
298
222
-
Arg
CCT
[ENA]
¡û
>WENV170661313
JXWV01001047
[JXWV] soil metagenome; rice field; organic FYM Plot
300
224
-
Arg
CCT
[ENA]
¡û
>W09133608
ACPJ01000003
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
198221
198297
+
Arg
CCT
[ENA]
¡û
>C09106370
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
3679156
3679080
-
Arg
CCT
[Ensembl]
¡û
>W2010145437
BLXY01000003
Thermodesulfobacteriota
Geomonas sp. Red736 [BLXY]
450123
450047
-
Arg
CCT
[ENA]
¡û
>W2012220742
VZRA01000002
Thermodesulfobacteriota
Geobacter sp. Red100 [VZRA]
478776
478700
-
Arg
CCT
[ENA]
¡û
>W2110016133
BLJA01000001
Thermodesulfobacteriota
Geobacter sp. AOG2 [BLJA]
2600040
2600116
+
Arg
CCT
[ENA]
¡û
>W2110428465
JAEMHL010000007
Thermodesulfobacteriota
Geomonas anaerohicana Red421 [JAEMHL]
116102
116178
+
Arg
CCT
[ENA]
¡û
>W2110428531
JAEMHM010000017
Thermodesulfobacteriota
Geomesophilobacter sediminis Red875 [JAEMHM]
65784
65860
+
Arg
CCT
[ENA]
¡û
>W2110593647
JAHCVJ010000003
Thermodesulfobacteriota
Citrifermentans pelophilum DSM 12255 [JAHCVJ]
353777
353701
-
Arg
CCT
[ENA]
¡û
>W2110593690
JAHCVK010000002
Thermodesulfobacteriota
Geobacter luticola JCM 17780 [JAHCVK]
352136
352212
+
Arg
CCT
[ENA]
¡û
>W2110689928
JAINZO010000001
Thermodesulfobacteriota
Geomonas sp. RG53 [JAINZO]
1808968
1808892
-
Arg
CCT
[ENA]
¡û
>C211349320
CP076723
Thermodesulfobacteriota
Geomonas sp. RG10 [CP076723]
1671276
1671352
+
Arg
CCT
-
¡û
>C211349377
CP076724
Thermodesulfobacteriota
Geomonas sp. RG29 [CP076724]
1498343
1498419
+
Arg
CCT
-
¡û
>C211359163
CP077683
Thermodesulfobacteriota
Geomonas sp. RG2 [CP077683]
1828846
1828770
-
Arg
CCT
-
¡û
>C211363033
CP078092
Thermodesulfobacteriota
Geobacter sulfurreducens PCA_v2 [CP078092]
1674549
1674625
+
Arg
CCT
-
¡û
>C211363283
CP078096
Thermodesulfobacteriota
Geomonas sp. RG3 [CP078096]
4898855
4898931
+
Arg
CCT
-
¡û
>C231128536
CP072789
Thermodesulfobacteriota
Geobacter sulfurreducens PL [CP072789]
1650018
1650094
+
Arg
CCT
-
¡û
>C231248293
CP087999
Thermodesulfobacteriota
Geomonas sp. RF6 [CP087999]
3822041
3822117
+
Arg
CCT
-
¡û
>C231369682
CP096574
Thermodesulfobacteriota
Geomonas paludis RG22 [CP096574]
3213683
3213607
-
Arg
CCT
-
¡û
>C11109592
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
3054921
3054845
-
Arg
CCT
[Ensembl]
¡û
>C161025461
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
4265095
4265019
-
Arg
CCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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