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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.227776 (29 seq.)
>W1711082110
LSTO01000019
Betaproteobacteria
Noviherbaspirillum denitrificans [LSTO]
5190
5266
+
Pro
GGG
[ENA]
¡û
>W1711386455
MEFK01000103
Betaproteobacteria
Thiobacillus sp. SCN 63-374 [MEFK]
8330
8254
-
Pro
GGG
[ENA]
¡û
>W1711504050
MKUE01000116
Betaproteobacteria
Thiobacillus sp. 65-1059 [MKUE]
5171
5247
+
Pro
GGG
[ENA]
¡û
>W1711504145
MKUG01000201
Betaproteobacteria
Thiobacillus sp. 65-1402 [MKUG]
8906
8830
-
Pro
GGG
[ENA]
¡û
>C171083840
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
746538
746462
-
Pro
GGG
-
¡û
>C171094252
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
683754
683678
-
Pro
GGG
-
¡û
>W131160260
AQWL01000003
Betaproteobacteria
Thiobacillus denitrificans DSM 12475 [AQWL]
405220
405144
-
Pro
GGG
[ENA]
¡û
>WENV180261352
OBEQ011285667
[OBEQ] groundwater metagenome; groundwater
6052
6128
+
Pro
GGG
[ENA]
¡û
>WENV180272455
OBEQ012381743
[OBEQ] groundwater metagenome; groundwater
1309
1233
-
Pro
GGG
[ENA]
¡û
>WENV180272833
OBEQ012422468
[OBEQ] groundwater metagenome; groundwater
411
487
+
Pro
GGG
[ENA]
¡û
>WENV180762464
ODHZ01145756
[ODHZ] human metagenome; G_DNA_Stool
383
307
-
Pro
GGG
[ENA]
¡û
>WENV181883154
OGXI01002113
[OGXI] human gut metagenome; faeces
8410
8334
-
Pro
GGG
[ENA]
¡û
>WENV181928798
OGYO01004600
[OGYO] human gut metagenome; faeces
5722
5798
+
Pro
GGG
[ENA]
¡û
>WENV183655714
OQWD01061040
[OQWD] human gut metagenome; human gut
408
332
-
Pro
GGG
[ENA]
¡û
>WENV170069437
CDZP01042289
[CDZP] gut metagenome; human stools
1120
1196
+
Pro
GGG
[ENA]
¡û
>WENV170071114
CDZQ01046168
[CDZQ] gut metagenome; human stools
1260
1184
-
Pro
GGG
[ENA]
¡û
>WENV170801779
MDSW01001955
[MDSW] marine metagenome; seawater
8084
8160
+
Pro
GGG
[ENA]
¡û
>WENV170879730
MDTC01100170
[MDTC] marine metagenome; seawater
713
789
+
Pro
GGG
[ENA]
¡û
>W09119210
ACDP01000043
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
176585
176509
-
Pro
GGG
[ENA]
¡û
>W1810068134
PDZH01000140
Betaproteobacteria
Chitinimonas sp. BJB300 [PDZH]
767
691
-
Pro
GGG
[ENA]
¡û
>W2010264344
CABKOJ020000009
Betaproteobacteria
Oxalobacter formigenes [CABKOJ]
1678987
1679063
+
Pro
GGG
[ENA]
¡û
>W2010707106
JACHKP010000001
Betaproteobacteria
Chitinimonas taiwanensis S00057 [JACHKP]
160673
160597
-
Pro
GGG
[ENA]
¡û
>W2011980560
VDCU02000006
Betaproteobacteria
Chitinimonas sp. BJB300 [VDCU]
143232
143156
-
Pro
GGG
[ENA]
¡û
>C201107535
CP042242
Betaproteobacteria
Oxalobacter formigenes SSYG-15 [CP042242]
2003594
2003670
+
Pro
GGG
-
¡û
>C231399410
CP098245
Betaproteobacteria
Oxalobacter formigenes HOxSLD-1 [CP098245]
934688
934612
-
Pro
GGG
-
¡û
>C231399500
CP098247
Betaproteobacteria
Oxalobacter sp. JAC-2022 BA2 [CP098247]
1572313
1572237
-
Pro
GGG
-
¡û
>C231399598
CP098249
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-2 [CP098249]
1561249
1561173
-
Pro
GGG
-
¡û
>C231399627
CP098250
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-3 [CP098250]
824509
824585
+
Pro
GGG
-
¡û
>W1710582037
FPKR01000011
Betaproteobacteria
Chitinimonas taiwanensis DSM 18899 [FPKR]
175856
175932
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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