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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.229042 (120 seq.)
>WENV180118344
OARX01040689
[OARX] human gut metagenome; ENVO:feces
213
137
-
Ile
GAT
[ENA]
¡û
>WENV180130042
OATE01004914
[OATE] human gut metagenome; faeces
288
212
-
Ile
GAT
[ENA]
¡û
>WENV180132188
OATH01002264
[OATH] human gut metagenome; faeces
2297
2221
-
Ile
GAT
[ENA]
¡û
>WENV180133199
OATI01014122
[OATI] human gut metagenome; faeces
346
270
-
Ile
GAT
[ENA]
¡û
>WENV180133205
OATI01014803
[OATI] human gut metagenome; faeces
136
212
+
Ile
GAT
[ENA]
¡û
>WENV180135157
OATK01007943
[OATK] human gut metagenome; faeces
2292
2216
-
Ile
GAT
[ENA]
¡û
>WENV180143505
OATX01063520
[OATX] human gut metagenome; faeces
86
162
+
Ile
GAT
[ENA]
¡û
>WENV180157284
OAUW01012790
[OAUW] human gut metagenome; faeces
295
219
-
Ile
GAT
[ENA]
¡û
>WENV180194503
OAZX01023018
[OAZX] human gut metagenome; faeces
103
179
+
Ile
GAT
[ENA]
¡û
>WENV180208309
OBAI01124235
[OBAI] human gut metagenome; human gut
303
227
-
Ile
GAT
[ENA]
¡û
>WENV180221369
OBAY01028789
[OBAY] human gut metagenome; human gut
189
113
-
Ile
GAT
[ENA]
¡û
>WENV180282121
OBIB01002783
[OBIB] human gut metagenome; human gut
1092
1016
-
Ile
GAT
[ENA]
¡û
>WENV180300177
OBJD01016547
[OBJD] human gut metagenome; human gut
801
725
-
Ile
GAT
[ENA]
¡û
>WENV180330613
OBKV01123740
[OBKV] human gut metagenome; human gut
303
227
-
Ile
GAT
[ENA]
¡û
>WENV180335197
OBLF01189183
[OBLF] metagenome; feces
83
7
-
Ile
GAT
[ENA]
¡û
>WENV180400554
OBRI01002409
[OBRI] human gut metagenome; ENVO:feces
855
931
+
Ile
GAT
[ENA]
¡û
>WENV180423106
OBVV01013740
[OBVV] human gut metagenome; faeces
144
220
+
Ile
GAT
[ENA]
¡û
>WENV180427047
OBVZ01011469
[OBVZ] human gut metagenome; faeces
266
190
-
Ile
GAT
[ENA]
¡û
>WENV180435101
OBWL01005551
[OBWL] human gut metagenome; faeces
2292
2216
-
Ile
GAT
[ENA]
¡û
>WENV180437314
OBWO01002656
[OBWO] human gut metagenome; faeces
2292
2216
-
Ile
GAT
[ENA]
¡û
>WENV180443704
OBWY01044075
[OBWY] human gut metagenome; faeces
288
212
-
Ile
GAT
[ENA]
¡û
>WENV180448351
OBXE01014038
[OBXE] human gut metagenome; faeces
288
212
-
Ile
GAT
[ENA]
¡û
>WENV180450505
OBXH01042576
[OBXH] human gut metagenome; faeces
86
162
+
Ile
GAT
[ENA]
¡û
>WENV180451703
OBXI01061924
[OBXI] human gut metagenome; faeces
60
136
+
Ile
GAT
[ENA]
¡û
>WENV180467719
OBYI01019731
[OBYI] human gut metagenome; faeces
121
197
+
Ile
GAT
[ENA]
¡û
>WENV180490762
OBZU01028013
[OBZU] human gut metagenome; faeces
444
368
-
Ile
GAT
[ENA]
¡û
>WENV180494061
OBZZ01005248
[OBZZ] human gut metagenome; faeces
561
637
+
Ile
GAT
[ENA]
¡û
>WENV180495255
OCAA01020706
[OCAA] human gut metagenome; faeces
258
182
-
Ile
GAT
[ENA]
¡û
>WENV180500482
OCAI01040577
[OCAI] human gut metagenome; faeces
289
213
-
Ile
GAT
[ENA]
¡û
>WENV180534657
OCHM01031192
[OCHM] human gut metagenome; human gut
896
820
-
Ile
GAT
[ENA]
¡û
>WENV180536495
OCHN01014537
[OCHN] human gut metagenome; human gut
1988
2064
+
Ile
GAT
[ENA]
¡û
>WENV180549261
OCIY01055961
[OCIY] human gut metagenome; human gut
57
133
+
Ile
GAT
[ENA]
¡û
>WENV180555236
OCJO01100960
[OCJO] human gut metagenome; human gut
14
90
+
Ile
GAT
[ENA]
¡û
>WENV180611529
OCPW01086633
[OCPW] human gut metagenome; human gut
91
167
+
Ile
GAT
[ENA]
¡û
>WENV180643468
OCRP01059318
[OCRP] human gut metagenome; human gut
190
114
-
Ile
GAT
[ENA]
¡û
>WENV180737897
ODHC01025639
[ODHC] human metagenome; G_DNA_Stool
8
84
+
Ile
GAT
[ENA]
¡û
>WENV180818931
ODJQ01133196
[ODJQ] human metagenome; G_DNA_Stool
85
161
+
Ile
GAT
[ENA]
¡û
>WENV180838673
ODKG01175713
[ODKG] human metagenome; G_DNA_Stool
60
136
+
Ile
GAT
[ENA]
¡û
>WENV180848818
ODKU01062361
[ODKU] human metagenome; G_DNA_Stool
60
136
+
Ile
GAT
[ENA]
¡û
>WENV180894685
ODMR01183997
[ODMR] human metagenome; G_DNA_Stool
86
162
+
Ile
GAT
[ENA]
¡û
>WENV181048955
ODYC01042322
[ODYC] human metagenome; G_DNA_Stool
285
209
-
Ile
GAT
[ENA]
¡û
>WENV181444230
OGDQ01013541
[OGDQ] metagenome; Human gut stool
264
340
+
Ile
GAT
[ENA]
¡û
>WENV181448190
OGDV01008144
[OGDV] metagenome; Human gut stool
896
820
-
Ile
GAT
[ENA]
¡û
>WENV181455401
OGEE01022097
[OGEE] metagenome; Human gut stool
737
661
-
Ile
GAT
[ENA]
¡û
>WENV181456954
OGEH01002498
[OGEH] metagenome; Human gut stool
141
217
+
Ile
GAT
[ENA]
¡û
>WENV181529187
OGHL01033615
[OGHL] metagenome; Human gut stool
871
795
-
Ile
GAT
[ENA]
¡û
>WENV181577704
OGJX01010566
[OGJX] metagenome; Human gut stool
1205
1129
-
Ile
GAT
[ENA]
¡û
>WENV181606045
OGLL01003778
[OGLL] metagenome; Human gut stool
42
118
+
Ile
GAT
[ENA]
¡û
>WENV181609804
OGLO01002718
[OGLO] metagenome; Human gut stool
564
640
+
Ile
GAT
[ENA]
¡û
>WENV181620161
OGME01004646
[OGME] metagenome; Human gut stool
2861
2785
-
Ile
GAT
[ENA]
¡û
>WENV181648971
OGNR01010098
[OGNR] metagenome; Human gut stool
1148
1072
-
Ile
GAT
[ENA]
¡û
>WENV181667349
OGOK01009615
[OGOK] human gut metagenome; faeces
130
206
+
Ile
GAT
[ENA]
¡û
>WENV181707622
OGPL01044100
[OGPL] human gut metagenome; faeces
160
236
+
Ile
GAT
[ENA]
¡û
>WENV181738805
OGQI01019049
[OGQI] human gut metagenome; faeces
2087
2011
-
Ile
GAT
[ENA]
¡û
>WENV181745587
OGQM01057055
[OGQM] human gut metagenome; faeces
701
625
-
Ile
GAT
[ENA]
¡û
>WENV181747587
OGQN01059852
[OGQN] human gut metagenome; faeces
650
574
-
Ile
GAT
[ENA]
¡û
>WENV181829619
OGUN01032733
[OGUN] human gut metagenome; faeces
216
140
-
Ile
GAT
[ENA]
¡û
>WENV181831161
OGUO01047712
[OGUO] human gut metagenome; faeces
810
734
-
Ile
GAT
[ENA]
¡û
>WENV182038431
OHDE01014325
[OHDE] human gut metagenome; feces
309
385
+
Ile
GAT
[ENA]
¡û
>WENV182062786
OHEV01004904
[OHEV] human gut metagenome; feces
2917
2841
-
Ile
GAT
[ENA]
¡û
>WENV182071928
OHFM01002204
[OHFM] human gut metagenome; feces
568
644
+
Ile
GAT
[ENA]
¡û
>WENV182076495
OHFV01005080
[OHFV] human gut metagenome; feces
2297
2221
-
Ile
GAT
[ENA]
¡û
>WENV182079399
OHGG01001635
[OHGG] human gut metagenome; feces
7574
7498
-
Ile
GAT
[ENA]
¡û
>WENV182095380
OHHL01010908
[OHHL] human gut metagenome; feces
1389
1313
-
Ile
GAT
[ENA]
¡û
>WENV182121403
OHJK01026915
[OHJK] human gut metagenome; feces
73
149
+
Ile
GAT
[ENA]
¡û
>WENV182129943
OHKA01002230
[OHKA] human gut metagenome; feces
4944
4868
-
Ile
GAT
[ENA]
¡û
>WENV182151973
OHLK01007921
[OHLK] human gut metagenome; feces
50
126
+
Ile
GAT
[ENA]
¡û
>WENV182521556
OIWQ01017853
[OIWQ] human gut metagenome; faeces
2372
2296
-
Ile
GAT
[ENA]
¡û
>WENV182530929
OIWV01016130
[OIWV] human gut metagenome; faeces
2372
2296
-
Ile
GAT
[ENA]
¡û
>WENV182614978
OJKC01000822
[OJKC] metagenome; faeces
2288
2212
-
Ile
GAT
[ENA]
¡û
>WENV182705210
OJOV01000438
[OJOV] human gut metagenome; stool sample
2366
2290
-
Ile
GAT
[ENA]
¡û
>WENV182706534
OJOW01015382
[OJOW] human gut metagenome; stool sample
415
339
-
Ile
GAT
[ENA]
¡û
>WENV182708150
OJOZ01002588
[OJOZ] human gut metagenome; stool sample
441
365
-
Ile
GAT
[ENA]
¡û
>WENV182728594
OJPW01018730
[OJPW] human gut metagenome; stool sample
896
820
-
Ile
GAT
[ENA]
¡û
>WENV182742369
OJQO01003827
[OJQO] human gut metagenome; stool sample
343
267
-
Ile
GAT
[ENA]
¡û
>WENV182754449
OJRD01015078
[OJRD] human gut metagenome; stool sample
275
351
+
Ile
GAT
[ENA]
¡û
>WENV182770163
OJRW01051436
[OJRW] human gut metagenome; human gut
141
217
+
Ile
GAT
[ENA]
¡û
>WENV182774119
OJRZ01021433
[OJRZ] human gut metagenome; human gut
1147
1071
-
Ile
GAT
[ENA]
¡û
>WENV182791600
OJSN01010113
[OJSN] human gut metagenome; human gut
2292
2216
-
Ile
GAT
[ENA]
¡û
>WENV182794686
OJSP01027127
[OJSP] human gut metagenome; human gut
896
820
-
Ile
GAT
[ENA]
¡û
>WENV182944235
OKVI01008488
[OKVI] human gut metagenome; human gut
154
230
+
Ile
GAT
[ENA]
¡û
>WENV183091954
OLKG01011256
[OLKG] human gut metagenome; human gut
1126
1202
+
Ile
GAT
[ENA]
¡û
>WENV183259322
OLRO01001697
[OLRO] human gut metagenome; faeces
144
220
+
Ile
GAT
[ENA]
¡û
>WENV183275112
OLRY01009529
[OLRY] human gut metagenome; faeces
2962
2886
-
Ile
GAT
[ENA]
¡û
>WENV183311633
OLVO01012084
[OLVO] human gut metagenome; faeces
3972
3896
-
Ile
GAT
[ENA]
¡û
>WENV183342093
OLWN01001839
[OLWN] human gut metagenome; feces
2149
2073
-
Ile
GAT
[ENA]
¡û
>WENV183369988
OLXT01002838
[OLXT] human gut metagenome; feces
4768
4692
-
Ile
GAT
[ENA]
¡û
>WENV183382970
OLYL01039663
[OLYL] human gut metagenome; feces
701
625
-
Ile
GAT
[ENA]
¡û
>WENV183417502
OMAV01001307
[OMAV] human gut metagenome; feces
2075
1999
-
Ile
GAT
[ENA]
¡û
>WENV183422019
OMBD01002839
[OMBD] human gut metagenome; feces
2376
2300
-
Ile
GAT
[ENA]
¡û
>WENV183439153
OMCF01039663
[OMCF] human gut metagenome; feces
701
625
-
Ile
GAT
[ENA]
¡û
>WENV183448061
OMCT01000027
[OMCT] human gut metagenome; feces
2372
2296
-
Ile
GAT
[ENA]
¡û
>WENV183474970
OMEV01001915
[OMEV] human gut metagenome; feces
6916
6840
-
Ile
GAT
[ENA]
¡û
>WENV183482500
OMFM01002481
[OMFM] human gut metagenome; feces
4389
4313
-
Ile
GAT
[ENA]
¡û
>WENV183483476
OMFN01005213
[OMFN] human gut metagenome; feces
2372
2296
-
Ile
GAT
[ENA]
¡û
>WENV183507711
OMGY01052277
[OMGY] human gut metagenome; human gut
141
217
+
Ile
GAT
[ENA]
¡û
>WENV183544558
OOAO01005117
[OOAO] human gut metagenome; human gut
1811
1887
+
Ile
GAT
[ENA]
¡û
>WENV170029353
CDYG01006184
[CDYG] gut metagenome; human stools
261
337
+
Ile
GAT
[ENA]
¡û
>WENV170033961
CDYK01037277
[CDYK] gut metagenome; human stools
566
642
+
Ile
GAT
[ENA]
¡û
>WENV170055397
CDZF01004672
[CDZF] gut metagenome; human stools
604
528
-
Ile
GAT
[ENA]
¡û
>WENV170064340
CDZK01041894
[CDZK] gut metagenome; human stools
128
204
+
Ile
GAT
[ENA]
¡û
>WENV170082137
CDZY01040771
[CDZY] gut metagenome; human stools
2661
2737
+
Ile
GAT
[ENA]
¡û
>WENV170083252
CEAA01027989
[CEAA] gut metagenome; human stools
2914
2838
-
Ile
GAT
[ENA]
¡û
>WENV170087981
CEAD01029782
[CEAD] gut metagenome; human stools
407
331
-
Ile
GAT
[ENA]
¡û
>WENV170093997
CEAH01050085
[CEAH] gut metagenome; human stools
418
342
-
Ile
GAT
[ENA]
¡û
>WENV170096678
CEAK01028247
[CEAK] gut metagenome; human stools
12568
12492
-
Ile
GAT
[ENA]
¡û
>WENV170096750
CEAK01031628
[CEAK] gut metagenome; human stools
12568
12492
-
Ile
GAT
[ENA]
¡û
>WENV170097194
CEAL01015934
[CEAL] gut metagenome; human stools
11963
11887
-
Ile
GAT
[ENA]
¡û
>C191183529
CP040882
Betaproteobacteria
Sutterella faecalis KGMB03119 [CP040882]
2079153
2079229
+
Ile
GAT
-
¡û
>C191183549
CP040882
Betaproteobacteria
Sutterella faecalis KGMB03119 [CP040882]
1534702
1534626
-
Ile
GAT
-
¡û
>W2010265739
CABKPI020000024
Betaproteobacteria
Sutterella wadsworthensis [CABKPI]
4541
4465
-
Ile
GAT
[ENA]
¡û
>W2010526504
JAANYG010000156
Betaproteobacteria
Sutterella wadsworthensis 1122h [JAANYG]
368
292
-
Ile
GAT
[ENA]
¡û
>W2010526623
JAANYI010000053
Betaproteobacteria
Sutterella wadsworthensis 1017h [JAANYI]
369
293
-
Ile
GAT
[ENA]
¡û
>W2110729061
JAJCLP010000072
Betaproteobacteria
Sutterella wadsworthensis DFI.4.78 [JAJCLP]
188
264
+
Ile
GAT
[ENA]
¡û
>C231654011
OV788642
Betaproteobacteria
Duodenibacillus massiliensis [OV788642]
1520311
1520387
+
Ile
GAT
-
¡û
>C231654018
OV788642
Betaproteobacteria
Duodenibacillus massiliensis [OV788642]
1776661
1776737
+
Ile
GAT
-
¡û
>C231654023
OV788642
Betaproteobacteria
Duodenibacillus massiliensis [OV788642]
2137241
2137317
+
Ile
GAT
-
¡û
>W1511579464
LARC01000118
Betaproteobacteria
Burkholderia sp. K4410.MGS-135 [LARC]
86
162
+
Ile
GAT
[ENA]
¡û
>WENV083865
BAAY01012532
Gut microbiome of Human (healthy human sample F2-W, Adult, Female)
859
937
+
Ile
GAT
[ENA]
>WENV084702
BABA01009162
Gut microbiome of Human (healthy human sample F2-Y, Child, Female)
471
549
+
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK