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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.229413 (77 seq.)
>W1710817302
LKLS01000094
Bacillota
Lactococcus lactis subsp. lactis [LKLS]
102
29
-
Met
CAT
[ENA]
¡û
>W1710817372
LKLT01000111
Bacillota
Lactococcus lactis subsp. lactis [LKLT]
864
937
+
Met
CAT
[ENA]
¡û
>W1710817481
LKLV01000156
Bacillota
Lactococcus lactis subsp. lactis [LKLV]
2300
2227
-
Met
CAT
[ENA]
¡û
>W1710817534
LKLW01000116
Bacillota
Lactococcus lactis subsp. lactis [LKLW]
1153
1080
-
Met
CAT
[ENA]
¡û
>W1710818382
LKPE01000059
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis [LKPE]
2037
2110
+
Met
CAT
[ENA]
¡û
>W1711228217
LXWJ01000012
Bacillota
Lactococcus lactis [LXWJ]
1127
1200
+
Met
CAT
[ENA]
¡û
>PL171001277
CP016699
Firmicutes
Lactococcus lactis subsp. lactis 275 plasmid:p275A
9300
9373
+
Met
CAT
[ENA]
¡û
>PL171001278
CP016707
Firmicutes
Lactococcus lactis subsp. cremoris UC109 plasmid:pUC109A
57793
57720
-
Met
CAT
[ENA]
¡û
>PL171001279
CP016729
Firmicutes
Lactococcus lactis subsp. cremoris JM4 plasmid:pJM4A
11499
11572
+
Met
CAT
[ENA]
¡û
>PL171001280
CP016737
Firmicutes
Lactococcus lactis subsp. cremoris JM3 plasmid:pJM3A
40039
39966
-
Met
CAT
[ENA]
¡û
>PL171001281
CP016745
Firmicutes
Lactococcus lactis subsp. cremoris JM2 plasmid:pMPJM2
92073
92000
-
Met
CAT
[ENA]
¡û
>PL171001282
CP016748
Firmicutes
Lactococcus lactis subsp. cremoris JM1 plasmid:pJM1B
12064
12137
+
Met
CAT
[ENA]
¡û
>W131187984
ASAE01000451
Bacillota
Lactococcus lactis subsp. lactis NCDO 2118 [ASAE]
546
619
+
Met
CAT
[ENA]
¡û
>C171042345
CP015895
Bacillota
Lactococcus lactis subsp. lactis 184 [CP015895]
2183160
2183087
-
Met
CAT
-
¡û
>C171042716
CP015902
Bacillota
Lactococcus lactis subsp. lactis UC06 [CP015902]
151518
151591
+
Met
CAT
-
¡û
>C171052756
CP016877
Bacillota
Streptococcus thermophilus KLDS 3.1003 [CP016877]
1411550
1411623
+
Met
CAT
-
¡û
>WENV180306767
OBJP01006274
[OBJP] human gut metagenome; human gut
468
541
+
fMet
CAT
[ENA]
¢þ
>W141073894
ASXF01000009
Bacillota
Lactococcus cremoris subsp. cremoris TIFN1 [ASXF]
1077
1150
+
Met
CAT
[ENA]
¡û
>W141075676
ATBA01000099
Bacillota
Lactococcus cremoris subsp. cremoris TIFN7 [ATBA]
1053
1126
+
Met
CAT
[ENA]
¡û
>W141075750
ATBB01000655
Bacillota
Lactococcus cremoris subsp. cremoris TIFN6 [ATBB]
1904
1831
-
Met
CAT
[ENA]
¡û
>W141075897
ATBE01000103
Bacillota
Lactococcus cremoris subsp. cremoris TIFN3 [ATBE]
1315
1242
-
Met
CAT
[ENA]
¡û
>WENV181005656
ODVY01083627
[ODVY] human metagenome; G_DNA_Stool
80
7
-
fMet
CAT
[ENA]
¢þ
>WENV181437109
OGDF01056511
[OGDF] human gut metagenome; human gut
1482
1409
-
fMet
CAT
[ENA]
¢þ
>W141171173
AXZK01000128
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis str. LD61 [AXZK]
1627
1554
-
Met
CAT
[ENA]
¡û
>WENV182412466
OIFT01000592
[OIFT] human gut metagenome; stool
1686
1613
-
fMet
CAT
[ENA]
¢þ
>WENV182636567
OJKZ01022758
[OJKZ] metagenome; surface
460
533
+
fMet
CAT
[ENA]
¢þ
>WENV182645115
OJLY01002816
[OJLY] metagenome; surface
3261
3188
-
fMet
CAT
[ENA]
¢þ
>WENV182861135
OKPC01000181
[OKPC] human gut metagenome; human gut
531
604
+
fMet
CAT
[ENA]
¢þ
>W141292088
JAUH01000191
Bacillota
Lactococcus cremoris subsp. cremoris HP [JAUH]
1555
1482
-
Met
CAT
[ENA]
¡û
>WENV183209311
OLQB01036458
[OLQB] human gut metagenome; faeces
1086
1013
-
fMet
CAT
[ENA]
¢þ
>WENV183218176
OLQI01026695
[OLQI] human gut metagenome; faeces
74
-1
-
fMet
CAT
[ENA]
¢þ
>WENV183231186
OLQT01042696
[OLQT] human gut metagenome; faeces
784
857
+
fMet
CAT
[ENA]
¢þ
>WENV183282808
OLSC01027298
[OLSC] human gut metagenome; faeces
366
292
-
fMet
CAT
[ENA]
¢þ
>WENV183407346
OMAC01000282
[OMAC] human gut metagenome; feces
886
959
+
fMet
CAT
[ENA]
¢þ
>WENV183470086
OMEJ01001688
[OMEJ] human gut metagenome; feces
785
858
+
fMet
CAT
[ENA]
¢þ
>WENV183473256
OMER01001893
[OMER] human gut metagenome; feces
6219
6146
-
fMet
CAT
[ENA]
¢þ
>PL191000021
AP018500
Firmicutes
Lactococcus lactis subsp. cremoris C4 plasmid:pC41 (AP018500)
77997
78070
+
Met
CAT
[ENA]
¡û
>PL191000897
CP031540
Firmicutes
Lactococcus lactis subsp. cremoris 3107 plasmid:p3107B (CP031540)
11499
11572
+
Met
CAT
[ENA]
¡û
>C181023101
CP017064
Bacillota
Streptococcus thermophilus ST3 [CP017064]
825141
825215
+
Met
CAT
-
¡û
>W09101726
AAGO01000144
Bacillota
Lactococcus cremoris subsp. cremoris SK11 [AAGO]
881
954
+
Met
CAT
[ENA]
¡û
>W1910583403
JXJZ01000169
Bacillota
Lactococcus cremoris subsp. cremoris ATCC 19257 [JXJZ]
1141
1068
-
Met
CAT
[ENA]
¡û
>W1910796995
MSGR01000243
Bacillota
Lactococcus cremoris subsp. cremoris ASCC880900 [MSGR]
1038
965
-
Met
CAT
[ENA]
¡û
>W1910810109
MUHS01000059
Bacillota
Lactococcus lactis subsp. lactis ASCC 519 [MUHS]
365
292
-
Met
CAT
[ENA]
¡û
>W1910871464
NCXC01000032
Bacillota
Lactococcus lactis KR [NCXC]
20201
20274
+
Met
CAT
[ENA]
¡û
>W1911503339
OESD01000015
Bacillota
Lactococcus lactis [OESD]
8534
8607
+
Met
CAT
[ENA]
¡û
>W1911503634
OESJ01000116
Bacillota
Lactococcus lactis [OESJ]
1014
1087
+
Met
CAT
[ENA]
¡û
>W1911503765
OESM01000015
Bacillota
Lactococcus lactis [OESM]
1021
1094
+
Met
CAT
[ENA]
¡û
>W1911503840
OESN01000097
Bacillota
Lactococcus lactis [OESN]
1209
1282
+
Met
CAT
[ENA]
¡û
>W1911503894
OESP01000098
Bacillota
Lactococcus lactis [OESP]
1830
1757
-
Met
CAT
[ENA]
¡û
>W1911532062
OGTW01000145
Bacillota
Lactococcus lactis [OGTW]
1921
1848
-
Met
CAT
[ENA]
¡û
>W1911532111
OGTW02000145
Bacillota
Lactococcus lactis [OGTW]
1921
1848
-
Met
CAT
[ENA]
¡û
>W1911631400
PUFD01000118
Bacillota
Lactococcus cremoris subsp. cremoris ATCC 19257 [PUFD]
2600
2673
+
Met
CAT
[ENA]
¡û
>W1810109511
PHHH01000063
Bacillota
Streptococcus thermophilus St-9 [PHHH]
1528
1454
-
Met
CAT
[ENA]
¡û
>W1810109597
PHHJ01000040
Bacillota
Streptococcus thermophilus St-5 [PHHJ]
1716
1642
-
Met
CAT
[ENA]
¡û
>W1810109636
PHHK01000052
Bacillota
Streptococcus thermophilus St-2 [PHHK]
942
1016
+
Met
CAT
[ENA]
¡û
>C151042497
CP009054
Bacillota
Lactococcus lactis subsp. lactis NCDO 2118 [CP009054]
1217043
1217116
+
Met
CAT
[Ensembl]
¡û
>C10108536
CP001834
Bacillota
Lactococcus lactis subsp. lactis KF147 [CP001834]
1208260
1208333
+
Met
CAT
[Ensembl]
¡û
>C11113072
CP002365
Bacillota
Lactococcus lactis subsp. lactis CV56 [CP002365]
2344296
2344223
-
Met
CAT
[Ensembl]
¡û
>W121010106
AGHX01000086
Bacillota
Lactococcus lactis subsp. cremoris CNCM I-1631 [AGHX]
117853
117926
+
Met
CAT
[ENA]
¡û
>W1610072886
BCVK01000106
Bacillota
Lactococcus cremoris subsp. cremoris NBRC 100676 [BCVK]
1551
1478
-
Met
CAT
[ENA]
¡û
>W1610635058
LISZ01000057
Bacillota
Lactococcus cremoris subsp. cremoris [LISZ]
829
902
+
Met
CAT
[ENA]
¡û
>W1610635233
LITC01000113
Bacillota
Lactococcus cremoris subsp. cremoris [LITC]
828
901
+
Met
CAT
[ENA]
¡û
>W1610635268
LITD01000048
Bacillota
Lactococcus cremoris subsp. cremoris [LITD]
829
902
+
Met
CAT
[ENA]
¡û
>W1610635318
LITE01000099
Bacillota
Lactococcus cremoris subsp. cremoris [LITE]
828
901
+
Met
CAT
[ENA]
¡û
>W1610638798
LIYE01000077
Bacillota
Lactococcus cremoris subsp. cremoris [LIYE]
829
902
+
Met
CAT
[ENA]
¡û
>W1610681290
LKLS01000094
Bacillota
Lactococcus lactis subsp. lactis [LKLS]
102
29
-
Met
CAT
[ENA]
¡û
>W1610681360
LKLT01000111
Bacillota
Lactococcus lactis subsp. lactis [LKLT]
864
937
+
Met
CAT
[ENA]
¡û
>W1610681469
LKLV01000156
Bacillota
Lactococcus lactis subsp. lactis [LKLV]
2300
2227
-
Met
CAT
[ENA]
¡û
>W1610681522
LKLW01000116
Bacillota
Lactococcus lactis subsp. lactis [LKLW]
1153
1080
-
Met
CAT
[ENA]
¡û
>W1610682789
LKPE01000059
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis [LKPE]
2037
2110
+
Met
CAT
[ENA]
¡û
>W1611012134
LXWJ01000012
Bacillota
Lactococcus lactis [LXWJ]
1127
1200
+
Met
CAT
[ENA]
¡û
>W1710070004
BCVK01000106
Bacillota
Lactococcus cremoris subsp. cremoris NBRC 100676 [BCVK]
1551
1478
-
Met
CAT
[ENA]
¡û
>W1710769631
LISZ01000057
Bacillota
Lactococcus cremoris subsp. cremoris [LISZ]
829
902
+
Met
CAT
[ENA]
¡û
>W1710769806
LITC01000113
Bacillota
Lactococcus cremoris subsp. cremoris [LITC]
828
901
+
Met
CAT
[ENA]
¡û
>W1710769841
LITD01000048
Bacillota
Lactococcus cremoris subsp. cremoris [LITD]
829
902
+
Met
CAT
[ENA]
¡û
>W1710769891
LITE01000099
Bacillota
Lactococcus cremoris subsp. cremoris [LITE]
828
901
+
Met
CAT
[ENA]
¡û
>W1710774629
LIYE01000077
Bacillota
Lactococcus cremoris subsp. cremoris [LIYE]
829
902
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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