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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.229473 (79 seq.)
>W1711021216
LQZA01000001
Betaproteobacteria
Ferrovum sp. PN-J185 [LQZA]
534791
534867
+
Pro
TGG
[ENA]
¡û
>W1711049901
LRRD01000010
Betaproteobacteria
Ferrovum myxofaciens Z-31 [LRRD]
12896
12972
+
Pro
TGG
[ENA]
¡û
>W1711413600
MGWO01000007
Betaproteobacteria
Gallionellales bacterium GWA2_54_124 [MGWO]
1100418
1100494
+
Pro
TGG
[ENA]
¡û
>W1711413601
MGWO01000007
Betaproteobacteria
Gallionellales bacterium GWA2_54_124 [MGWO]
1100552
1100628
+
Pro
TGG
[ENA]
¡û
>W1711413831
MGXE01000053
Betaproteobacteria
Gallionellales bacterium RIFOXYD12_FULL_53_10 [MGXE]
2950
2874
-
Pro
TGG
[ENA]
¡û
>W1711582060
MNUX01000030
Betaproteobacteria
Gallionellaceae bacterium CG1_02_60_325 [MNUX]
11814
11890
+
Pro
TGG
[ENA]
¡û
>C171116295
CP021138
Betaproteobacteria
Sulfuriferula sp. AH1 [CP021138]
1996298
1996374
+
Pro
TGG
-
¡û
>C013371
CP000284
Betaproteobacteria
Methylobacillus flagellatus KT [CP000284]
79967
80043
+
Pro
TGG
[Ensembl]
¡û
>WENV180012199
FLSK01256037
[FLSK] metagenome; saliva
348
272
-
Pro
TGG
[ENA]
¡û
>WENV180038394
FZPU01000105
[FZPU] metagenome; underground water
8858
8934
+
Pro
TGG
[ENA]
¡û
>WENV180225887
OBBP01001100
[OBBP] human oral metagenome; human oral
1483
1407
-
Pro
TGG
[ENA]
¡û
>WENV180727661
ODGU01009262
[ODGU] human metagenome; G_DNA_Supragingival plaque
624
700
+
Pro
TGG
[ENA]
¡û
>WENV180731403
ODGW01000326
[ODGW] human metagenome; G_DNA_Supragingival plaque
2518
2594
+
Pro
TGG
[ENA]
¡û
>WENV180749962
ODHS01000172
[ODHS] human metagenome; G_DNA_Supragingival plaque
43183
43107
-
Pro
TGG
[ENA]
¡û
>WENV180759582
ODHY01038960
[ODHY] human metagenome; G_DNA_Buccal mucosa
273
349
+
Pro
TGG
[ENA]
¡û
>WENV180797495
ODJB01066650
[ODJB] human metagenome; G_DNA_Supragingival plaque
594
670
+
Pro
TGG
[ENA]
¡û
>WENV180803882
ODJG01000142
[ODJG] human metagenome; G_DNA_Supragingival plaque
41194
41118
-
Pro
TGG
[ENA]
¡û
>WENV180824834
ODJX01063557
[ODJX] human metagenome; G_DNA_Supragingival plaque
111
35
-
Pro
TGG
[ENA]
¡û
>WENV180831928
ODKC01000255
[ODKC] human metagenome; G_DNA_Supragingival plaque
17365
17441
+
Pro
TGG
[ENA]
¡û
>WENV180845224
ODKT01000021
[ODKT] human metagenome; G_DNA_Supragingival plaque
82649
82573
-
Pro
TGG
[ENA]
¡û
>WENV180858977
ODLC01102319
[ODLC] human metagenome; G_DNA_Tongue dorsum
196
120
-
Pro
TGG
[ENA]
¡û
>WENV180859229
ODLD01000096
[ODLD] human metagenome; G_DNA_Supragingival plaque
17651
17727
+
Pro
TGG
[ENA]
¡û
>WENV180924709
ODTK01012578
[ODTK] human metagenome; G_DNA_Supragingival plaque
317
241
-
Pro
TGG
[ENA]
¡û
>WENV180933788
ODTR01002601
[ODTR] human metagenome; G_DNA_Supragingival plaque
1729
1805
+
Pro
TGG
[ENA]
¡û
>WENV180935155
ODTS01077345
[ODTS] human metagenome; G_DNA_Subgingival plaque
305
229
-
Pro
TGG
[ENA]
¡û
>WENV180937726
ODTX01000045
[ODTX] human metagenome; G_DNA_Supragingival plaque
31796
31872
+
Pro
TGG
[ENA]
¡û
>WENV180964244
ODUO01000748
[ODUO] human metagenome; G_DNA_Supragingival plaque
13062
12986
-
Pro
TGG
[ENA]
¡û
>WENV180974653
ODUX01036860
[ODUX] human metagenome; G_DNA_Buccal mucosa
311
235
-
Pro
TGG
[ENA]
¡û
>WENV180978294
ODUZ01041987
[ODUZ] human metagenome; G_DNA_Tongue dorsum
389
313
-
Pro
TGG
[ENA]
¡û
>WENV180981020
ODVE01005377
[ODVE] human metagenome; G_DNA_Supragingival plaque
221
297
+
Pro
TGG
[ENA]
¡û
>WENV180986886
ODVK01001672
[ODVK] human metagenome; G_DNA_Supragingival plaque
7788
7864
+
Pro
TGG
[ENA]
¡û
>WENV180999020
ODVT01004761
[ODVT] human metagenome; G_DNA_Buccal mucosa
1191
1267
+
Pro
TGG
[ENA]
¡û
>WENV181029610
ODXF01001013
[ODXF] human metagenome; G_DNA_Supragingival plaque
2017
1941
-
Pro
TGG
[ENA]
¡û
>WENV181045084
ODXV01155194
[ODXV] human metagenome; G_DNA_Tongue dorsum
132
56
-
Pro
TGG
[ENA]
¡û
>WENV181064822
ODYP01112334
[ODYP] human metagenome; G_DNA_Supragingival plaque
192
268
+
Pro
TGG
[ENA]
¡û
>WENV181067077
ODZI01005884
[ODZI] human metagenome; G_DNA_Supragingival plaque
1996
1920
-
Pro
TGG
[ENA]
¡û
>WENV181075186
OEAO01082756
[OEAO] human metagenome; G_DNA_Tongue dorsum
175
99
-
Pro
TGG
[ENA]
¡û
>WENV181083885
OEAV01031306
[OEAV] human metagenome; G_DNA_Supragingival plaque
531
607
+
Pro
TGG
[ENA]
¡û
>WENV181101203
OECM01015368
[OECM] human metagenome; G_DNA_Buccal mucosa
348
272
-
Pro
TGG
[ENA]
¡û
>WENV181121054
OEFL01000266
[OEFL] human metagenome; G_DNA_Supragingival plaque
14796
14720
-
Pro
TGG
[ENA]
¡û
>WENV181123540
OEFQ01000013
[OEFQ] human metagenome; G_DNA_Supragingival plaque
122317
122393
+
Pro
TGG
[ENA]
¡û
>WENV181137534
OEGJ01006317
[OEGJ] human metagenome; G_DNA_Supragingival plaque
1678
1602
-
Pro
TGG
[ENA]
¡û
>WENV181143733
OEHM01007412
[OEHM] human metagenome; G_DNA_Supragingival plaque
1137
1213
+
Pro
TGG
[ENA]
¡û
>WENV181144266
OEHO01001130
[OEHO] metagenome; unknown
444
520
+
Pro
TGG
[ENA]
¡û
>WENV181177768
OEJS01016579
[OEJS] human metagenome; G_DNA_Supragingival plaque
305
229
-
Pro
TGG
[ENA]
¡û
>WENV181178952
OEJT01000705
[OEJT] human metagenome; G_DNA_Supragingival plaque
2887
2811
-
Pro
TGG
[ENA]
¡û
>WENV181180694
OEJU01000660
[OEJU] human metagenome; G_DNA_Supragingival plaque
18381
18457
+
Pro
TGG
[ENA]
¡û
>WENV181182081
OEJV01002098
[OEJV] human metagenome; G_DNA_Supragingival plaque
905
981
+
Pro
TGG
[ENA]
¡û
>WENV170434104
CEUS01235625
[CEUS] marine metagenome genome assembly TARA_125_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
366
290
-
Pro
TGG
[ENA]
¡û
>WENV170556635
CXWL01011449
[CXWL] groundwater metagenome; biofilm material
10589
10513
-
Pro
TGG
[ENA]
¡û
>WENV170558410
CXWL01068213
[CXWL] groundwater metagenome; biofilm material
5721
5645
-
Pro
TGG
[ENA]
¡û
>WENV170558573
CXWL01079246
[CXWL] groundwater metagenome; biofilm material
3861
3785
-
Pro
TGG
[ENA]
¡û
>WENV170559032
CXWL01107318
[CXWL] groundwater metagenome; biofilm material
2318
2242
-
Pro
TGG
[ENA]
¡û
>WENV170574646
FLYN01002342
[FLYN] hot springs metagenome; Sediment
470
394
-
Pro
TGG
[ENA]
¡û
>WENV170652642
JRYH01010629
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
314
390
+
Pro
TGG
[ENA]
¡û
>WENV170961402
MLJW01000026
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
176760
176836
+
Pro
TGG
[ENA]
¡û
>WENV170961588
MLJW01000192
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
3110
3034
-
Pro
TGG
[ENA]
¡û
>WENV170961721
MLJW01000675
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
7824
7748
-
Pro
TGG
[ENA]
¡û
>C191209572
LR134378
Betaproteobacteria
Lautropia mirabilis NCTC12852 [LR134378]
1635224
1635300
+
Pro
TGG
-
¡û
>W1910128281
BHGL01000002
Betaproteobacteria
Sulfuriferula thiophila mst6 [BHGL]
3432
3356
-
Pro
TGG
[ENA]
¡û
>C141000194
AP013066
Betaproteobacteria
Sulfuricella denitrificans skB26 [AP013066]
1427509
1427433
-
Pro
TGG
[Ensembl]
¡û
>W1910547763
FZOA01000010
Betaproteobacteria
Methylobacillus rhizosphaerae Ca-68 [FZOA]
10848
10924
+
Pro
TGG
[ENA]
¡û
>W1810464181
QAAE01000006
Betaproteobacteria
Nitrosomonas aestuarii Nm36 [QAAE]
128451
128527
+
Pro
TGG
[ENA]
¡û
>W2010080787
BHGL01000002
Betaproteobacteria
Sulfuriferula thiophila mst6 [BHGL]
3432
3356
-
Pro
TGG
[ENA]
¡û
>W2010429524
FZOA01000010
Betaproteobacteria
Methylobacillus rhizosphaerae Ca-68 [FZOA]
10848
10924
+
Pro
TGG
[ENA]
¡û
>W2011290266
QRCC01000008
Betaproteobacteria
Nitrosomonas sp. HPC101 [QRCC]
22211
22287
+
Pro
TGG
[ENA]
¡û
>W2011631032
SMCO01000001
Betaproteobacteria
Sulfurirhabdus autotrophica DSM 100309 [SMCO]
871852
871776
-
Pro
TGG
[ENA]
¡û
>C211274461
CP070327
Betaproteobacteria
Ferrovum myxofaciens [CP070327]
2712010
2711934
-
Pro
TGG
-
¡û
>C211285145
CP071137
Betaproteobacteria
Ferrovum myxofaciens [CP071137]
50743
50667
-
Pro
TGG
-
¡û
>W1510019318
BBWF01000017
Betaproteobacteria
Sulfuricella sp. T08 [BBWF]
52246
52322
+
Pro
TGG
[ENA]
¡û
>C241004677
AP021881
Betaproteobacteria
Sulfuriferula nivalis SGTM [AP021881]
2259690
2259766
+
Pro
TGG
-
¡û
>C241004733
AP021884
Betaproteobacteria
Sulfuriferula plumbiphila Gro7 [AP021884]
2500219
2500295
+
Pro
TGG
-
¡û
>C241158109
CP053676
Betaproteobacteria
Ferrovum myxofaciens [CP053676]
2631509
2631433
-
Pro
TGG
-
¡û
>W2310018116
BQXC01000001
Betaproteobacteria
Nitrosomonas sp. PY1 [BQXC]
1215450
1215526
+
Pro
TGG
[ENA]
¡û
>W11144234
AEQP01000008
Betaproteobacteria
Lautropia mirabilis ATCC 51599 [AEQP]
39195
39119
-
Pro
TGG
[ENA]
¡û
>W1610869504
LQZA01000001
Betaproteobacteria
Ferrovum sp. PN-J185 [LQZA]
534791
534867
+
Pro
TGG
[ENA]
¡û
>W1610891030
LRRD01000010
Betaproteobacteria
Ferrovum myxofaciens Z-31 [LRRD]
12896
12972
+
Pro
TGG
[ENA]
¡û
>W1710551708
FOGH01000020
Betaproteobacteria
Nitrosomonas sp. Nm51 [FOGH]
35860
35784
-
Pro
TGG
[ENA]
¡û
>W1710578256
FPBL01000002
Betaproteobacteria
Nitrosomonas eutropha [FPBL]
95460
95384
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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