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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.229583 (61 seq.)
>W1710890707
LNBY01000017
Alphaproteobacteria
Erythrobacter sp. AP23 [LNBY]
126128
126204
+
Ile
GAT
[ENA]
¡û
>W1711175157
LWEO01000142
Alphaproteobacteria
Erythrobacter sp. HI0020 [LWEO]
3740
3664
-
Ile
GAT
[ENA]
¡û
>W1711175356
LWES01000435
Alphaproteobacteria
Erythrobacter sp. HI0028 [LWES]
3815
3739
-
Ile
GAT
[ENA]
¡û
>W1711175539
LWEV01002094
Alphaproteobacteria
Erythrobacter sp. HI0037 [LWEV]
3801
3725
-
Ile
GAT
[ENA]
¡û
>W1711175542
LWEV01002100
Alphaproteobacteria
Erythrobacter sp. HI0037 [LWEV]
2161
2237
+
Ile
GAT
[ENA]
¡û
>W1711175607
LWEW01000913
Alphaproteobacteria
Erythrobacter sp. HI0038 [LWEW]
2212
2288
+
Ile
GAT
[ENA]
¡û
>W1711175614
LWEW01001103
Alphaproteobacteria
Erythrobacter sp. HI0038 [LWEW]
986
1062
+
Ile
GAT
[ENA]
¡û
>W1711176761
LWFO01000417
Alphaproteobacteria
Erythrobacter sp. HI0074 [LWFO]
2169
2245
+
Ile
GAT
[ENA]
¡û
>W1711176944
LWFR01000366
Alphaproteobacteria
Erythrobacter sp. HI0077 [LWFR]
3817
3741
-
Ile
GAT
[ENA]
¡û
>WENV180045671
MOXS02160183
[MOXS] marine metagenome; 60 m water sample filtered on 0.2 um supor filter
583
507
-
Ile
GAT
[ENA]
¡û
>WENV181321446
OFKM01000885
[OFKM] marine metagenome; sea ice
846
922
+
Ile
GAT
[ENA]
¡û
>WENV182581748
OJGY01002272
[OJGY] seawater metagenome; Sea water
605
529
-
Ile
GAT
[ENA]
¡û
>WENV182581797
OJGZ01000025
[OJGZ] seawater metagenome; Sea water
88920
88996
+
Ile
GAT
[ENA]
¡û
>W141273320
CCSI01000004
Alphaproteobacteria
Qipengyuania vulgaris [CCSI]
264471
264547
+
Ile
GAT
[ENA]
¡û
>WENV183614807
OOEA01001435
[OOEA] marine metagenome; sea ice
1554
1478
-
Ile
GAT
[ENA]
¡û
>WENV183749651
PPFU01196216
[PPFU] hypolithon metagenome; Antarctic Hypolithon
242
318
+
Ile
GAT
[ENA]
¡û
>WENV170408765
CEUI01059565
[CEUI] marine metagenome genome assembly TARA_125_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2799
2723
-
Ile
GAT
[ENA]
¡û
>WENV170439502
CEUV01036776
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
581
657
+
Ile
GAT
[ENA]
¡û
>WENV170527865
CEWJ01005203
[CEWJ] marine metagenome genome assembly TARA_128_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
552
628
+
Ile
GAT
[ENA]
¡û
>WENV170579856
FUFK010041837
[FUFK] metagenome; unknown
2021
2097
+
Ile
GAT
[ENA]
¡û
>WENV170580107
FUFK010044408
[FUFK] metagenome; unknown
28944
29020
+
Ile
GAT
[ENA]
¡û
>WENV170580906
FUFK010054147
[FUFK] metagenome; unknown
5379
5303
-
Ile
GAT
[ENA]
¡û
>WENV170585879
FUFK010337565
[FUFK] metagenome; unknown
981
905
-
Ile
GAT
[ENA]
¡û
>WENV170591415
FUFK010769528
[FUFK] metagenome; unknown
4708
4632
-
Ile
GAT
[ENA]
¡û
>WENV170591519
FUFK010777751
[FUFK] metagenome; unknown
3064
3140
+
Ile
GAT
[ENA]
¡û
>WENV170761562
LUMV01001558
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
2878
2802
-
Ile
GAT
[ENA]
¡û
>WENV170763231
LWDU01004803
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
2893
2817
-
Ile
GAT
[ENA]
¡û
>C181067651
CP022528
Alphaproteobacteria
Qipengyuania flava VG1 [CP022528]
386112
386188
+
Ile
GAT
-
¡û
>C181067659
CP022528
Alphaproteobacteria
Qipengyuania flava VG1 [CP022528]
908424
908500
+
Ile
GAT
-
¡û
>C181108539
CP024920
Alphaproteobacteria
Qipengyuania seohaensis SW-135 [CP024920]
962277
962201
-
Ile
GAT
-
¡û
>C181199758
CP031357
Alphaproteobacteria
Erythrobacter aureus YH-07 [CP031357]
2800504
2800428
-
Ile
GAT
-
¡û
>C181199781
CP031357
Alphaproteobacteria
Erythrobacter aureus YH-07 [CP031357]
99872
99796
-
Ile
GAT
-
¡û
>W2010560256
JAASQU010000005
Alphaproteobacteria
Erythrobacter flavus DSM 16421 [JAASQU]
3783
3707
-
Ile
GAT
[ENA]
¡û
>W2012438662
WTYC01000008
Alphaproteobacteria
Erythrobacter vulgaris DSM 17792 [WTYC]
8323
8247
-
Ile
GAT
[ENA]
¡û
>W2012438773
WTYF01000003
Alphaproteobacteria
Erythrobacter gaetbuli DSM 16225 [WTYF]
35482
35558
+
Ile
GAT
[ENA]
¡û
>W2012438943
WTYI01000001
Alphaproteobacteria
Erythrobacter aquimaris JCM 12189 [WTYI]
1685677
1685601
-
Ile
GAT
[ENA]
¡û
>W2110652267
JAHVIF010000001
Alphaproteobacteria
Qipengyuania flava DP6Y7-4 [JAHVIF]
2575089
2575013
-
Ile
GAT
[ENA]
¡û
>W2110653918
JAHVJJ010000001
Alphaproteobacteria
Qipengyuania aquimaris DP1N28-9 [JAHVJJ]
2360173
2360097
-
Ile
GAT
[ENA]
¡û
>W2110677828
JAIGNK010000008
Alphaproteobacteria
Qipengyuania sp. 1NDH17 [JAIGNK]
3477
3401
-
Ile
GAT
[ENA]
¡û
>W2110677870
JAIGNL010000002
Alphaproteobacteria
Qipengyuania sp. 1NDW9 [JAIGNL]
413508
413432
-
Ile
GAT
[ENA]
¡û
>W2110677897
JAIGNM010000001
Alphaproteobacteria
Qipengyuania sp. 1XM1-15A [JAIGNM]
1143352
1143276
-
Ile
GAT
[ENA]
¡û
>W2110678208
JAIGNT010000006
Alphaproteobacteria
Qipengyuania sp. YG19 [JAIGNT]
118960
118884
-
Ile
GAT
[ENA]
¡û
>W2110678255
JAIGNU010000001
Alphaproteobacteria
Qipengyuania sp. YG27 [JAIGNU]
773180
773104
-
Ile
GAT
[ENA]
¡û
>W2110678258
JAIGNU010000001
Alphaproteobacteria
Qipengyuania sp. YG27 [JAIGNU]
765830
765754
-
Ile
GAT
[ENA]
¡û
>C201050654
CP032228
Alphaproteobacteria
Erythrobacter flavus 21-3 [CP032228]
3059677
3059601
-
Ile
GAT
-
¡û
>C201050677
CP032228
Alphaproteobacteria
Erythrobacter flavus 21-3 [CP032228]
427754
427678
-
Ile
GAT
-
¡û
>W2110700827
JAIUZH010000016
Alphaproteobacteria
Qipengyuania flava DP5Y115-1 [JAIUZH]
77
153
+
Ile
GAT
[ENA]
¡û
>W2110701142
JAIUZO010000002
Alphaproteobacteria
Qipengyuania gaetbuli DP3N0-4 [JAIUZO]
1828522
1828598
+
Ile
GAT
[ENA]
¡û
>W2110707395
JAIWKE010000005
Alphaproteobacteria
Qipengyuania flava DP7Y115-1 [JAIWKE]
2072
2148
+
Ile
GAT
[ENA]
¡û
>C231356229
CP095079
Alphaproteobacteria
Qipengyuania flava DP4Y115-4 [CP095079]
2452457
2452381
-
Ile
GAT
-
¡û
>W1610751144
LNBY01000017
Alphaproteobacteria
Erythrobacter sp. AP23 [LNBY]
126128
126204
+
Ile
GAT
[ENA]
¡û
>W1610983470
LWEO01000142
Alphaproteobacteria
Erythrobacter sp. HI0020 [LWEO]
3740
3664
-
Ile
GAT
[ENA]
¡û
>W1610983669
LWES01000435
Alphaproteobacteria
Erythrobacter sp. HI0028 [LWES]
3815
3739
-
Ile
GAT
[ENA]
¡û
>W1610983852
LWEV01002094
Alphaproteobacteria
Erythrobacter sp. HI0037 [LWEV]
3801
3725
-
Ile
GAT
[ENA]
¡û
>W1610983855
LWEV01002100
Alphaproteobacteria
Erythrobacter sp. HI0037 [LWEV]
2161
2237
+
Ile
GAT
[ENA]
¡û
>W1610983920
LWEW01000913
Alphaproteobacteria
Erythrobacter sp. HI0038 [LWEW]
2212
2288
+
Ile
GAT
[ENA]
¡û
>W1610983927
LWEW01001103
Alphaproteobacteria
Erythrobacter sp. HI0038 [LWEW]
986
1062
+
Ile
GAT
[ENA]
¡û
>W1610985074
LWFO01000417
Alphaproteobacteria
Erythrobacter sp. HI0074 [LWFO]
2169
2245
+
Ile
GAT
[ENA]
¡û
>W1610985257
LWFR01000366
Alphaproteobacteria
Erythrobacter sp. HI0077 [LWFR]
3817
3741
-
Ile
GAT
[ENA]
¡û
>WENV081629
ABEF01052805
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
2416
2494
+
Ile
GAT
[ENA]
>W1710572865
FOWZ01000003
Alphaproteobacteria
Qipengyuania nanhaisediminis [FOWZ]
36981
37057
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK