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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.229587 (110 seq.)
>C171083828
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
2467795
2467719
-
Ile
GAT
-
¡û
>C171083830
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
2373379
2373303
-
Ile
GAT
-
¡û
>C171094240
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
2369801
2369725
-
Ile
GAT
-
¡û
>C171094242
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
2275383
2275307
-
Ile
GAT
-
¡û
>C171116300
CP021138
Betaproteobacteria
Sulfuriferula sp. AH1 [CP021138]
2765367
2765291
-
Ile
GAT
-
¡û
>C171116302
CP021138
Betaproteobacteria
Sulfuriferula sp. AH1 [CP021138]
2707841
2707765
-
Ile
GAT
-
¡û
>C171116313
CP021138
Betaproteobacteria
Sulfuriferula sp. AH1 [CP021138]
2000712
2000636
-
Ile
GAT
-
¡û
>C171130517
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
2160368
2160292
-
Ile
GAT
-
¡û
>C171130520
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
1854839
1854763
-
Ile
GAT
-
¡û
>C010350
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
204476
204552
+
Ile
GAT
[Ensembl]
¡û
>C010353
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
576711
576787
+
Ile
GAT
[Ensembl]
¡û
>WENV180030158
FTJL01237371
[FTJL] metagenome; soil
1228
1152
-
Ile
GAT
[ENA]
¡û
>WENV180032704
FTKD01000020
[FTKD] metagenome; soil
111951
111875
-
Ile
GAT
[ENA]
¡û
>WENV180032843
FTKD01001697
[FTKD] metagenome; soil
2563
2487
-
Ile
GAT
[ENA]
¡û
>WENV180033121
FTKD01411761
[FTKD] metagenome; soil
23896
23972
+
Ile
GAT
[ENA]
¡û
>WENV180341178
OBLI01088354
[OBLI] pig gut metagenome; faeces
4
80
+
Ile
GAT
[ENA]
¡û
>WENV180384075
OBOW01004478
[OBOW] marine metagenome; seawater
215
291
+
Ile
GAT
[ENA]
¡û
>WENV180819105
ODJQ01259505
[ODJQ] human metagenome; G_DNA_Stool
119
195
+
Ile
GAT
[ENA]
¡û
>WENV180996241
ODVR01174430
[ODVR] human metagenome; G_DNA_Stool
71
147
+
Ile
GAT
[ENA]
¡û
>WENV181149492
OEHT01094354
[OEHT] human metagenome; G_DNA_Stool
142
218
+
Ile
GAT
[ENA]
¡û
>WENV181447775
OGDU01042022
[OGDU] metagenome; Human gut stool
697
621
-
Ile
GAT
[ENA]
¡û
>WENV181884106
OGXI01040431
[OGXI] human gut metagenome; faeces
880
804
-
Ile
GAT
[ENA]
¡û
>WENV181929723
OGYO01057696
[OGYO] human gut metagenome; faeces
755
679
-
Ile
GAT
[ENA]
¡û
>WENV181998298
OHAU01048927
[OHAU] human gut metagenome; faeces
155
231
+
Ile
GAT
[ENA]
¡û
>WENV182009871
OHBJ01064698
[OHBJ] human gut metagenome; faeces
663
587
-
Ile
GAT
[ENA]
¡û
>WENV182609415
OJJV01007597
[OJJV] metagenome; faeces
2390
2314
-
Ile
GAT
[ENA]
¡û
>WENV183085610
OLJF01006933
[OLJF] metagenome; faeces
243
319
+
Ile
GAT
[ENA]
¡û
>WENV183614519
OODW01000007
[OODW] marine metagenome; sea ice
4026
3950
-
Ile
GAT
[ENA]
¡û
>WENV183617987
OOFL01000960
[OOFL] marine metagenome; seawater
1147
1071
-
Ile
GAT
[ENA]
¡û
>WENV183697680
OUNK010017618
[OUNK] metagenome; soil
1388
1312
-
Ile
GAT
[ENA]
¡û
>WENV183733472
PJTY01002594
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
2460
2384
-
Ile
GAT
[ENA]
¡û
>WENV183744332
PJUK01008578
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
338
262
-
Ile
GAT
[ENA]
¡û
>WENV170071304
CDZQ01052295
[CDZQ] gut metagenome; human stools
1428
1352
-
Ile
GAT
[ENA]
¡û
>WENV170142048
CENX01340552
[CENX] marine metagenome genome assembly TARA_018_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
627
551
-
Ile
GAT
[ENA]
¡û
>WENV170961916
MLJW01006657
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
310
386
+
Ile
GAT
[ENA]
¡û
>W09119226
ACDP01000054
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
2009
2085
+
Ile
GAT
[ENA]
¡û
>W1911572367
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
3251140
3251216
+
Ile
GAT
[ENA]
¡û
>W1911572392
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
1799937
1799861
-
Ile
GAT
[ENA]
¡û
>W1911572394
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
1519626
1519550
-
Ile
GAT
[ENA]
¡û
>W1911647624
QAJP01000012
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
2176
2252
+
Ile
GAT
[ENA]
¡û
>W1810297237
PTLZ01000008
Betaproteobacteria
Herminiimonas fonticola S-94 [PTLZ]
2160
2236
+
Ile
GAT
[ENA]
¡û
>W1810399996
PYFP01000001
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
2849086
2849010
-
Ile
GAT
[ENA]
¡û
>W1810400021
PYFP01000002
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
1658033
1658109
+
Ile
GAT
[ENA]
¡û
>W1810400033
PYFP01000002
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
5023
4947
-
Ile
GAT
[ENA]
¡û
>W1810400036
PYFP01000003
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
517399
517323
-
Ile
GAT
[ENA]
¡û
>W1810400038
PYFP01000003
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
4973
4897
-
Ile
GAT
[ENA]
¡û
>W1810400043
PYFP01000006
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
5468
5392
-
Ile
GAT
[ENA]
¡û
>W2010080813
BHGL01000031
Betaproteobacteria
Sulfuriferula thiophila mst6 [BHGL]
245
169
-
Ile
GAT
[ENA]
¡û
>W2010264334
CABKOJ020000008
Betaproteobacteria
Oxalobacter formigenes [CABKOJ]
3871
3795
-
Ile
GAT
[ENA]
¡û
>W2010534928
JAAOZT010000019
Betaproteobacteria
Glaciimonas immobilis DSM 23240 [JAAOZT]
3769
3693
-
Ile
GAT
[ENA]
¡û
>W2011182788
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
3251140
3251216
+
Ile
GAT
[ENA]
¡û
>W2011182813
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
1799937
1799861
-
Ile
GAT
[ENA]
¡û
>W2011182815
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
1519626
1519550
-
Ile
GAT
[ENA]
¡û
>W2011235608
QAJP01000012
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
2176
2252
+
Ile
GAT
[ENA]
¡û
>W2011353288
RAIL01000001
Betaproteobacteria
Collimonas fungivorans ES_Al-A1 [RAIL]
778217
778293
+
Ile
GAT
[ENA]
¡û
>W2011353290
RAIL01000001
Betaproteobacteria
Collimonas fungivorans ES_Al-A1 [RAIL]
1025452
1025528
+
Ile
GAT
[ENA]
¡û
>W2011353318
RAIL01000001
Betaproteobacteria
Collimonas fungivorans ES_Al-A1 [RAIL]
4749203
4749127
-
Ile
GAT
[ENA]
¡û
>W2011641738
SMYL01000031
Betaproteobacteria
Oxalobacteraceae bacterium SA-152 [SMYL]
1951
2027
+
Ile
GAT
[ENA]
¡û
>W2011647584
SNWF01000001
Betaproteobacteria
Herminiimonas fonticola DSM 18555 [SNWF]
3785
3709
-
Ile
GAT
[ENA]
¡û
>W2012047569
VIVV01000032
Betaproteobacteria
Collimonas arenae 515 [VIVV]
3699
3623
-
Ile
GAT
[ENA]
¡û
>W2012144257
VTTH01000004
Betaproteobacteria
Oxalobacteraceae bacterium CHu64-6-4 [VTTH]
445336
445412
+
Ile
GAT
[ENA]
¡û
>W2012144259
VTTH01000004
Betaproteobacteria
Oxalobacteraceae bacterium CHu64-6-4 [VTTH]
450988
451064
+
Ile
GAT
[ENA]
¡û
>W2012400535
WNWM01000002
Betaproteobacteria
Massilia dura DSM 17513 [WNWM]
458832
458756
-
Ile
GAT
[ENA]
¡û
>W2012509445
WXXL01000075
Betaproteobacteria
PMB3(1) [WXXL]
3739
3663
-
Ile
GAT
[ENA]
¡û
>W2110018729
BMCG01000001
Betaproteobacteria
Oxalicibacterium flavum CCM 7086 [BMCG]
470900
470824
-
Ile
GAT
[ENA]
¡û
>W2110018759
BMCG01000005
Betaproteobacteria
Oxalicibacterium flavum CCM 7086 [BMCG]
86107
86183
+
Ile
GAT
[ENA]
¡û
>W2110020076
BMDI01000001
Betaproteobacteria
Oxalicibacterium faecigallinarum CCM 2767 [BMDI]
1700883
1700807
-
Ile
GAT
[ENA]
¡û
>W2110020100
BMDI01000003
Betaproteobacteria
Oxalicibacterium faecigallinarum CCM 2767 [BMDI]
90341
90417
+
Ile
GAT
[ENA]
¡û
>W2110020331
BMDP01000007
Betaproteobacteria
Oxalicibacterium solurbis CCM 7664 [BMDP]
2052
2128
+
Ile
GAT
[ENA]
¡û
>W2110021024
BMED01000013
Betaproteobacteria
Undibacterium terreum CGMCC 1.10998 [BMED]
1680
1756
+
Ile
GAT
[ENA]
¡û
>W2110241843
JACOFX010000052
Betaproteobacteria
Undibacterium sp. NL8W [JACOFX]
192
268
+
Ile
GAT
[ENA]
¡û
>W2110241846
JACOFX010000064
Betaproteobacteria
Undibacterium sp. NL8W [JACOFX]
408
332
-
Ile
GAT
[ENA]
¡û
>W2110242262
JACOGF010000030
Betaproteobacteria
Undibacterium sp. CY18W [JACOGF]
3734
3658
-
Ile
GAT
[ENA]
¡û
>W2110360996
JADOEL010000037
Betaproteobacteria
Herminiimonas contaminans Marseille-Q4544 [JADOEL]
3658
3582
-
Ile
GAT
[ENA]
¡û
>W2110566802
JAGQED010000054
Betaproteobacteria
Collimonas antrihumi DSM 104040 [JAGQED]
1859
1935
+
Ile
GAT
[ENA]
¡û
>C201000055
AP018439
Betaproteobacteria
Undibacterium sp. KW1 [AP018439]
1553153
1553229
+
Ile
GAT
-
¡û
>C201000059
AP018439
Betaproteobacteria
Undibacterium sp. KW1 [AP018439]
2128629
2128705
+
Ile
GAT
-
¡û
>C201000098
AP018439
Betaproteobacteria
Undibacterium sp. KW1 [AP018439]
6010516
6010440
-
Ile
GAT
-
¡û
>C201000103
AP018439
Betaproteobacteria
Undibacterium sp. KW1 [AP018439]
5385521
5385445
-
Ile
GAT
-
¡û
>C201107523
CP042242
Betaproteobacteria
Oxalobacter formigenes SSYG-15 [CP042242]
287566
287642
+
Ile
GAT
-
¡û
>C201107525
CP042242
Betaproteobacteria
Oxalobacter formigenes SSYG-15 [CP042242]
381982
382058
+
Ile
GAT
-
¡û
>C231399419
CP098245
Betaproteobacteria
Oxalobacter formigenes HOxSLD-1 [CP098245]
187099
187023
-
Ile
GAT
-
¡û
>C231399421
CP098245
Betaproteobacteria
Oxalobacter formigenes HOxSLD-1 [CP098245]
92682
92606
-
Ile
GAT
-
¡û
>C231399470
CP098247
Betaproteobacteria
Oxalobacter sp. JAC-2022 BA2 [CP098247]
2578
2654
+
Ile
GAT
-
¡û
>C231399472
CP098247
Betaproteobacteria
Oxalobacter sp. JAC-2022 BA2 [CP098247]
8066
8142
+
Ile
GAT
-
¡û
>C231399489
CP098247
Betaproteobacteria
Oxalobacter sp. JAC-2022 BA2 [CP098247]
2312755
2312831
+
Ile
GAT
-
¡û
>C231399569
CP098249
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-2 [CP098249]
1912
1988
+
Ile
GAT
-
¡û
>C231399571
CP098249
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-2 [CP098249]
98520
98596
+
Ile
GAT
-
¡û
>C231399573
CP098249
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-2 [CP098249]
104008
104084
+
Ile
GAT
-
¡û
>C231399575
CP098249
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-2 [CP098249]
109496
109572
+
Ile
GAT
-
¡û
>C231399661
CP098250
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-3 [CP098250]
111123
111047
-
Ile
GAT
-
¡û
>C231399663
CP098250
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-3 [CP098250]
14531
14455
-
Ile
GAT
-
¡û
>C231399665
CP098250
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-3 [CP098250]
9043
8967
-
Ile
GAT
-
¡û
>C231399667
CP098250
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-3 [CP098250]
3555
3479
-
Ile
GAT
-
¡û
>C241004661
AP021881
Betaproteobacteria
Sulfuriferula nivalis SGTM [AP021881]
155467
155543
+
Ile
GAT
-
¡û
>C241004680
AP021881
Betaproteobacteria
Sulfuriferula nivalis SGTM [AP021881]
3053889
3053813
-
Ile
GAT
-
¡û
>C241004687
AP021881
Betaproteobacteria
Sulfuriferula nivalis SGTM [AP021881]
2530411
2530335
-
Ile
GAT
-
¡û
>C11105058
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
830846
830922
+
Ile
GAT
[Ensembl]
¡û
>C11105077
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
4697619
4697543
-
Ile
GAT
[Ensembl]
¡û
>C11105079
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
4445982
4445906
-
Ile
GAT
[Ensembl]
¡û
>C161053627
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
657367
657443
+
Ile
GAT
-
¡û
>C161053653
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
4180777
4180701
-
Ile
GAT
-
¡û
>C161053655
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
3931505
3931429
-
Ile
GAT
-
¡û
>C161053722
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
657467
657543
+
Ile
GAT
[Ensembl]
¡û
>C161053749
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
4166089
4166013
-
Ile
GAT
[Ensembl]
¡û
>C161053751
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
3916765
3916689
-
Ile
GAT
[Ensembl]
¡û
>WENV082528
BAAV01015704
Gut microbiome of Human (healthy human sample F1-T, Adult, Female)
204
128
-
Ile
GAT
[ENA]
>W1710530388
FNOR01000042
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
3780
3704
-
Ile
GAT
[ENA]
¡û
>W1710556476
FOKF01000085
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
467
391
-
Ile
GAT
[ENA]
¡û
>W1710557555
FOLC01000053
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
3694
3618
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK