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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.230166 (57 seq.)
>W1710879955
LMRZ01000006
Actinomycetota
Janibacter sp. Soil728 [LMRZ]
225950
225876
-
Met
CAT
[ENA]
¡û
>W1711021456
LQZG01000004
Actinomycetota
Janibacter melonis [LQZG]
140469
140545
+
Met
CAT
[ENA]
¡û
>W1711187219
LWOW01000059
Actinomycetota
Brevibacterium sp. HMSC22B09 [LWOW]
50299
50225
-
Met
CAT
[ENA]
¡û
>W1711187743
LWPT01000008
Actinomycetota
Brevibacterium sp. HMSC07C04 [LWPT]
42911
42837
-
Met
CAT
[ENA]
¡û
>W1711664260
MQVT01000019
Actinomycetota
Dermacoccus nishinomiyaensis [MQVT]
53234
53310
+
Met
CAT
[ENA]
¡û
>C171022208
CP013290
Actinomycetota
Janibacter indicus YFY001 [CP013290]
544459
544533
+
Met
CAT
-
¡û
>WENV180650252
OCSY01000866
[OCSY] marine metagenome; 30 L Plastic container
369
445
+
Met
CAT
[ENA]
¡û
>WENV181324519
OFLF01000364
[OFLF] marine metagenome; melt pond
2087
2163
+
Met
CAT
[ENA]
¡û
>W141243093
CAJD01000011
Actinomycetota
Brevibacterium ravenspurgense 5401308 [CAJD]
210016
210090
+
Met
CAT
[ENA]
¡û
>WENV183615145
OOEA01077426
[OOEA] marine metagenome; sea ice
82
158
+
Met
CAT
[ENA]
¡û
>WENV183615359
OOEB01007941
[OOEB] marine metagenome; sea ice
859
783
-
Met
CAT
[ENA]
¡û
>WENV183618068
OOFL01013942
[OOFL] marine metagenome; seawater
348
272
-
Met
CAT
[ENA]
¡û
>WENV183621733
OOFU01045200
[OOFU] marine metagenome; sea ice
25
101
+
Met
CAT
[ENA]
¡û
>WENV183623169
OOFX01023049
[OOFX] marine metagenome; sea ice
256
180
-
Met
CAT
[ENA]
¡û
>WENV183623517
OOGA01006466
[OOGA] marine metagenome; sea ice
357
433
+
Met
CAT
[ENA]
¡û
>WENV183625426
OOGF01028607
[OOGF] marine metagenome; seawater
580
504
-
Met
CAT
[ENA]
¡û
>WENV170567570
FLMP01001948
[FLMP] seawater metagenome; seawater
3756
3832
+
Met
CAT
[ENA]
¡û
>WENV170950838
MEHZ011520945
[MEHZ] marine metagenome; marine surface water
10031
10107
+
Met
CAT
[ENA]
¡û
>C181196298
CP031145
Actinomycetota
Intrasporangium calvum C5 [CP031145]
2854417
2854341
-
Met
CAT
-
¡û
>C191147723
CP036164
Actinomycetota
Janibacter limosus P3-3-X1 [CP036164]
2565287
2565213
-
Met
CAT
-
¡û
>C191174168
CP040020
Actinomycetota
Brevibacterium sp. CS2 [CP040020]
125908
125834
-
Met
CAT
-
¡û
>W1911596761
PNHK01000002
Actinomycetota
Brevibacterium paucivorans UMB1301 [PNHK]
191472
191548
+
Met
CAT
[ENA]
¡û
>W1911752277
QWLM01000001
Actinomycetota
Dermacoccus abyssi MT1.1 [QWLM]
249023
248947
-
Met
CAT
[ENA]
¡û
>C151039179
CP008889
Actinomycetota
Dermacoccus nishinomiyaensis M25 [CP008889]
773226
773302
+
Met
CAT
[Ensembl]
¡û
>W2011205657
PNHK01000002
Actinomycetota
Brevibacterium paucivorans UMB1301 [PNHK]
191472
191548
+
Met
CAT
[ENA]
¡û
>W2011320522
QWLM01000001
Actinomycetota
Dermacoccus abyssi MT1.1 [QWLM]
249023
248947
-
Met
CAT
[ENA]
¡û
>SRA1046107
SRR035093.237934
454 Sequencing (SRP001814)
304
228
-
Met
CAT
[SRA]
>W2011554021
SEHL01000003
Actinomycetota
Dermacoccus sp. 147Ba [SEHL]
304765
304841
+
Met
CAT
[ENA]
¡û
>W2011633523
SMFS01000001
Actinomycetota
Dermacoccus sp. DS28 SAI-028 [SMFS]
730038
730114
+
Met
CAT
[ENA]
¡û
>SRA1047368
SRR035093.524274
454 Sequencing (SRP001814)
156
232
+
Met
CAT
[SRA]
>SRA1047498
SRR035093.557877
454 Sequencing (SRP001814)
352
276
-
Met
CAT
[SRA]
>W2011821850
UFXX01000001
Actinomycetota
Dermacoccus nishinomiyaensis NCTC11039 [UFXX]
1191310
1191234
-
Met
CAT
[ENA]
¡û
>W2011996833
VECS01000004
Actinomycetota
Dermacoccus nishinomiyaensis DE0240 [VECS]
241681
241757
+
Met
CAT
[ENA]
¡û
>W2012019904
VFOC01000001
Actinomycetota
Terrabacter sp. SLBN-196 [VFOC]
2244459
2244535
+
Met
CAT
[ENA]
¡û
>W2012046026
VIUW01000001
Actinomycetota
Marihabitans asiaticum DSM 18935 [VIUW]
772972
773046
+
Met
CAT
[ENA]
¡û
>SRA1052107
SRR035098.142223
454 Sequencing (SRP001819)
127
203
+
Met
CAT
[SRA]
>W2110104085
CAJFZZ010000003
Actinomycetota
Janibacter melonis Marseille-P690 [CAJFZZ]
47097
47171
+
Met
CAT
[ENA]
¡û
>W2110105486
CAJGVC010000001
Actinomycetota
Janibacter melonis Marseille-P2733 [CAJGVC]
2727404
2727330
-
Met
CAT
[ENA]
¡û
>W2110123867
CAJTBP010000001
Actinomycetota
Barrientosiimonas humi type strain: 39 [CAJTBP]
823712
823786
+
Met
CAT
[ENA]
¡û
>W2110297696
JADALA010000002
Actinomycetota
Janibacter melonis M714 [JADALA]
1675159
1675233
+
Met
CAT
[ENA]
¡û
>W2110297786
JADALC010000001
Actinomycetota
Janibacter melonis M714 [JADALC]
149346
149420
+
Met
CAT
[ENA]
¡û
>W2110297931
JADALF010000001
Actinomycetota
Janibacter melonis M714 [JADALF]
1682190
1682264
+
Met
CAT
[ENA]
¡û
>W2110459114
JAFBCP010000001
Actinomycetota
Brevibacterium paucivorans DSM 13657 [JAFBCP]
1652670
1652746
+
Met
CAT
[ENA]
¡û
>C211129441
CP060120
Actinomycetota
Janibacter sp. YB324 [CP060120]
545402
545476
+
Met
CAT
-
¡û
>C211165645
CP062789
Actinomycetota
Janibacter indicus TT2 [CP062789]
553593
553667
+
Met
CAT
-
¡û
>W2110724382
JAJBZM010000001
Actinomycetota
Janibacter melonis NBRC107855 [JAJBZM]
1243582
1243508
-
Met
CAT
[ENA]
¡û
>W2110761305
QSNP01000001
Actinomycetota
Janibacter melonis 3a [QSNP]
39156
39082
-
Met
CAT
[ENA]
¡û
>C241011975
AP027735
Actinomycetota
Barrientosiimonas endolithica NBRC 110608 [AP027735]
552690
552764
+
Met
CAT
-
¡û
>C241071304
CP043031
Actinomycetota
Dermacoccus abyssi HZAU 226 [CP043031]
642238
642314
+
Met
CAT
-
¡û
>C241090419
CP044548
Actinomycetota
Janibacter melonis M714 [CP044548]
1792359
1792285
-
Met
CAT
-
¡û
>W121063447
AJKR01000001
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
6119
6195
+
Met
CAT
[ENA]
¡û
>W1610625738
LIBA01000219
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
1512
1436
-
Met
CAT
[ENA]
¡û
>W1610731076
LMJI01000001
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
2019724
2019798
+
Met
CAT
[ENA]
¡û
>W1610742301
LMRZ01000006
Actinomycetota
Janibacter sp. Soil728 [LMRZ]
225950
225876
-
Met
CAT
[ENA]
¡û
>W1610869744
LQZG01000004
Actinomycetota
Janibacter melonis [LQZG]
140469
140545
+
Met
CAT
[ENA]
¡û
>W1710606087
FWXN01000003
Actinomycetota
Janibacter indicus [FWXN]
123071
123145
+
Met
CAT
[ENA]
¡û
>W1710756865
LIBA01000219
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
1512
1436
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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