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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.230640 (8 seq.)
>WENV180532852
OCHL01004422
[OCHL] human gut metagenome; human gut
2052
2128
+
Glu
TTC
[ENA]
¡û
>WENV180537523
OCHO01000138
[OCHO] human gut metagenome; human gut
22474
22550
+
Glu
TTC
[ENA]
¡û
>WENV182515834
OIWN01003987
[OIWN] human gut metagenome; faeces
3163
3087
-
Glu
TTC
[ENA]
¡û
>WENV182538797
OIXV01000265
[OIXV] human gut metagenome; faeces
50768
50844
+
Glu
TTC
[ENA]
¡û
>WENV183272441
OLRW01035987
[OLRW] human gut metagenome; faeces
93
17
-
Glu
TTC
[ENA]
¡û
>WENV183638555
OQVI01000116
[OQVI] human gut metagenome; human gut
21420
21496
+
Glu
TTC
[ENA]
¡û
>WENV170057185
CDZG01028526
[CDZG] gut metagenome; human stools
252
328
+
Glu
TTC
[ENA]
¡û
>WENV170636362
JFBN01195530
[JFBN] chicken gut metagenome; ceca of Broiler chicken
274
350
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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