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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.230756 (34 seq.)
>w024801
AAZA01000024
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
51913
51835
-
Arg
ACG
[ENA]
¡û
>WENV180021309
FTEH01000344
[FTEH] metagenome; soil
980
1056
+
Arg
ACG
[ENA]
¡û
>WENV180022938
FTHA01001687
[FTHA] metagenome; soil
62052
62128
+
Arg
ACG
[ENA]
¡û
>WENV180023173
FTHP01000282
[FTHP] metagenome; soil
1882
1958
+
Arg
ACG
[ENA]
¡û
>WENV180024380
FTIH01000080
[FTIH] metagenome; soil
1792
1716
-
Arg
ACG
[ENA]
¡û
>WENV180024498
FTIH01016091
[FTIH] metagenome; soil
881
805
-
Arg
ACG
[ENA]
¡û
>WENV180029680
FTJL01000346
[FTJL] metagenome; soil
1323
1399
+
Arg
ACG
[ENA]
¡û
>WENV180030021
FTJL01067656
[FTJL] metagenome; soil
129
205
+
Arg
ACG
[ENA]
¡û
>WENV180030392
FTJM01002138
[FTJM] metagenome; soil
3
79
+
Arg
ACG
[ENA]
¡û
>WENV180031137
FTJO01006391
[FTJO] metagenome; soil
1
77
+
Arg
ACG
[ENA]
¡û
>WENV180031345
FTJO01026374
[FTJO] metagenome; soil
1086
1010
-
Arg
ACG
[ENA]
¡û
>WENV180031435
FTJO01102932
[FTJO] metagenome; soil
2874
2798
-
Arg
ACG
[ENA]
¡û
>WENV180031691
FTJQ01185197
[FTJQ] metagenome; soil
19
95
+
Arg
ACG
[ENA]
¡û
>WENV180032358
FTJZ01006218
[FTJZ] metagenome; soil
343
419
+
Arg
ACG
[ENA]
¡û
>WENV180034180
FTKP01004096
[FTKP] metagenome; soil
1470
1394
-
Arg
ACG
[ENA]
¡û
>WENV180034207
FTKP01013919
[FTKP] metagenome; soil
1387
1311
-
Arg
ACG
[ENA]
¡û
>WENV180034236
FTKP01031614
[FTKP] metagenome; soil
366
290
-
Arg
ACG
[ENA]
¡û
>WENV180034282
FTKP01116552
[FTKP] metagenome; soil
817
741
-
Arg
ACG
[ENA]
¡û
>WENV180035578
FTLA01024332
[FTLA] metagenome; soil
35
111
+
Arg
ACG
[ENA]
¡û
>WENV180035658
FTLA01206428
[FTLA] metagenome; soil
280
204
-
Arg
ACG
[ENA]
¡û
>W08010660
ABRF01000014
Thermodesulfobacteriota
Geobacter sp. M21 [ABRF]
23490
23566
+
Arg
ACG
[ENA]
¡û
>WENV183696674
OULM01000040
[OULM] metagenome; soil
16
92
+
Arg
ACG
[ENA]
¡û
>W09133613
ACPJ01000004
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
146365
146289
-
Arg
ACG
[ENA]
¡û
>C09106388
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
114338
114414
+
Arg
ACG
[Ensembl]
¡û
>W2011680785
SRSC01000001
Thermodesulfobacteriota
Geobacter sp. Red111 [SRSC]
1068276
1068352
+
Arg
ACG
[ENA]
¡û
>W2011693996
SSYA01000001
Thermodesulfobacteriota
Geobacter sp. S62 [SSYA]
1340534
1340610
+
Arg
ACG
[ENA]
¡û
>W2110428518
JAEMHM010000012
Thermodesulfobacteriota
Geomesophilobacter sediminis Red875 [JAEMHM]
115768
115692
-
Arg
ACG
[ENA]
¡û
>W2110593657
JAHCVJ010000004
Thermodesulfobacteriota
Citrifermentans pelophilum DSM 12255 [JAHCVJ]
275554
275478
-
Arg
ACG
[ENA]
¡û
>W2110617930
JAHLME010000001
Thermodesulfobacteriota
Geomonas azotofigens Red51 [JAHLME]
676581
676657
+
Arg
ACG
[ENA]
¡û
>W1510006453
BAZF01000017
Thermodesulfobacteriota
Geobacter sp. OR-1 [BAZF]
90404
90480
+
Arg
ACG
[ENA]
¡û
>C211349393
CP076724
Thermodesulfobacteriota
Geomonas sp. RG29 [CP076724]
4366866
4366942
+
Arg
ACG
-
¡û
>C211359148
CP077683
Thermodesulfobacteriota
Geomonas sp. RG2 [CP077683]
3731102
3731026
-
Arg
ACG
-
¡û
>C211363268
CP078096
Thermodesulfobacteriota
Geomonas sp. RG3 [CP078096]
2996437
2996513
+
Arg
ACG
-
¡û
>C11109552
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
117064
117140
+
Arg
ACG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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