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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.231084 (18 seq.)
>C007946
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2181867
2181943
+
Arg
ACG
[Ensembl]
¡û
>WENV180233118
OBCP01000130
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
37078
37002
-
Arg
ACG
[ENA]
¢þ
>WENV180569800
OCLR01000473
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
16198
16274
+
Arg
ACG
[ENA]
¢þ
>WENV180570749
OCLS01000473
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
16203
16279
+
Arg
ACG
[ENA]
¢þ
>WENV180571485
OCLT01000132
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
37078
37002
-
Arg
ACG
[ENA]
¢þ
>WENV180573738
OCLW01000132
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
37078
37002
-
Arg
ACG
[ENA]
¢þ
>WENV180639795
OCRL01000134
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
37078
37002
-
Arg
ACG
[ENA]
¢þ
>WENV180640727
OCRM01000132
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
37078
37002
-
Arg
ACG
[ENA]
¢þ
>W141169945
AXWT01000048
Deinococcota
Deinococcus murrayi DSM 11303 [AXWT]
418
494
+
Arg
ACG
[ENA]
¡û
>C181134313
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
2068214
2068138
-
Arg
ACG
-
¡û
>C181196489
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
80987
80911
-
Arg
ACG
-
¡û
>W141561468
JHYL01000006
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
37348
37272
-
Arg
ACG
[ENA]
¡û
>W141711950
JMQF01000033
Deinococcota
Deinococcus sp. RL [JMQF]
97204
97280
+
Arg
ACG
[ENA]
¡û
>W1810423326
PYSV01000006
Deinococcota
Deinococcus arcticus OD32 [PYSV]
193081
193005
-
Arg
ACG
[ENA]
¡û
>C10105348
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2181867
2181943
+
Arg
ACG
[Ensembl]
¡û
>C11107275
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2181867
2181943
+
Arg
ACG
[Ensembl]
¡û
>C161082993
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
542897
542821
-
Arg
ACG
-
¡û
>W1710542278
FNZA01000016
Deinococcota
Deinococcus reticulitermitis [FNZA]
22771
22695
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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