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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.231166 (18 seq.)
>W1711743912
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
1510564
1510640
+
Arg
CCT
[ENA]
¡û
>W1712080677
NHMK01000029
Deinococcota
Deinococcus indicus [NHMK]
6243
6319
+
Arg
CCT
[ENA]
¡û
>C007932
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
146086
146162
+
Arg
CCT
[Ensembl]
¡û
>WENV180233181
OBCP01000177
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
2377
2453
+
Arg
CCT
[ENA]
¢þ
>WENV180569955
OCLR01001039
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
2345
2421
+
Arg
CCT
[ENA]
¢þ
>WENV180570899
OCLS01001034
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
2345
2421
+
Arg
CCT
[ENA]
¢þ
>WENV180571564
OCLT01000187
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
2377
2453
+
Arg
CCT
[ENA]
¢þ
>WENV180573797
OCLW01000183
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
2377
2453
+
Arg
CCT
[ENA]
¢þ
>WENV180639869
OCRL01000183
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
2377
2453
+
Arg
CCT
[ENA]
¢þ
>WENV180640790
OCRM01000185
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
2377
2453
+
Arg
CCT
[ENA]
¢þ
>W141169932
AXWT01000024
Deinococcota
Deinococcus murrayi DSM 11303 [AXWT]
26038
26114
+
Arg
CCT
[ENA]
¡û
>C191121232
CP034183
Deinococcota
Deinococcus psychrotolerans S14-83 [CP034183, CP034184]
1133812
1133736
-
Arg
CCT
-
¡û
>W141561475
JHYL01000012
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
104530
104454
-
Arg
CCT
[ENA]
¡û
>W141711940
JMQF01000029
Deinococcota
Deinococcus sp. RL [JMQF]
5399
5475
+
Arg
CCT
[ENA]
¡û
>C09103879
CP001114
Deinococcota
Deinococcus deserti VCD115 [CP001114]
59563
59639
+
Arg
CCT
[Ensembl]
¡û
>C10105334
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
146086
146162
+
Arg
CCT
[Ensembl]
¡û
>C11107261
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
146086
146162
+
Arg
CCT
[Ensembl]
¡û
>C161082979
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
2578448
2578372
-
Arg
CCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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