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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23169 (10 seq.)
>WENV181194506
OEQQ01012444
[OEQQ] metagenome; Caecal content
395
485
+
Ser
GCT
[ENA]
¡û
>WENV181195039
OEQS01000390
[OEQS] metagenome; Caecal content
1060
1150
+
Ser
GCT
[ENA]
¡û
>WENV181197455
OERB01001726
[OERB] metagenome; Caecal content
1079
1169
+
Ser
GCT
[ENA]
¡û
>WENV181197861
OERC01003355
[OERC] metagenome; Caecal content
1707
1617
-
Ser
GCT
[ENA]
¡û
>WENV181204245
OERY01003000
[OERY] metagenome; Caecal content
630
720
+
Ser
GCT
[ENA]
¡û
>WENV181204561
OERZ01001570
[OERZ] metagenome; Caecal content
3262
3352
+
Ser
GCT
[ENA]
¡û
>WENV181304414
OFHW01103480
[OFHW] metagenome; Caecal content
198
108
-
Ser
GCT
[ENA]
¡û
>WENV183206115
OLQA01000102
[OLQA] human gut metagenome; faeces
49015
49105
+
Ser
GCT
[ENA]
¡û
>W1911500818
OEMR01000006
Bacillota
Faecalitalea sp. Marseille-P3755 [OEMR]
457073
457163
+
Ser
GCT
[ENA]
¡û
>W2011160485
OEMR01000006
Bacillota
Faecalitalea sp. Marseille-P3755 [OEMR]
457073
457163
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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