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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.231777 (25 seq.)
>W1712037261
NFIC01000001
Bacteroidota
Bacteroides sp. An51A [NFIC]
573768
573694
-
Ile
GAT
[ENA]
¡û
>W1712037267
NFIC01000001
Bacteroidota
Bacteroides sp. An51A [NFIC]
85174
85100
-
Ile
GAT
[ENA]
¡û
>W1712037275
NFIC01000002
Bacteroidota
Bacteroides sp. An51A [NFIC]
587356
587430
+
Ile
GAT
[ENA]
¡û
>W1712037300
NFIC01000004
Bacteroidota
Bacteroides sp. An51A [NFIC]
345455
345381
-
Ile
GAT
[ENA]
¡û
>W1712037316
NFIC01000011
Bacteroidota
Bacteroides sp. An51A [NFIC]
66501
66575
+
Ile
GAT
[ENA]
¡û
>W1712038592
NFJA01000194
Bacteroidota
Bacteroides sp. An279 [NFJA]
1474
1400
-
Ile
GAT
[ENA]
¡û
>WENV182509563
OIWI01000939
[OIWI] human gut metagenome; faeces
544
470
-
Ile
GAT
[ENA]
¢þ
>WENV182666366
OJNH01018872
[OJNH] human gut metagenome; feces
258
332
+
Ile
GAT
[ENA]
¢þ
>WENV182902357
OKSW01006234
[OKSW] human gut metagenome; feces
663
737
+
Ile
GAT
[ENA]
¢þ
>WENV183536828
OOAG01016289
[OOAG] human gut metagenome; human gut
258
332
+
Ile
GAT
[ENA]
¢þ
>WENV183543373
OOAN01008473
[OOAN] human gut metagenome; human gut
2254
2180
-
Ile
GAT
[ENA]
¢þ
>WENV183555782
OOBN01014105
[OOBN] human gut metagenome; human gut
2118
2044
-
Ile
GAT
[ENA]
¢þ
>WENV183595782
OODD01000661
[OODD] human gut metagenome; human gut
239
313
+
Ile
GAT
[ENA]
¢þ
>WENV183762786
PPYE01283622
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
251
325
+
Ile
GAT
[ENA]
¢þ
>C191219331
LR215980
Bacteroidota
Paraprevotella xylaniphila YIT 11841 [LR215980]
3774308
3774382
+
Ile
GAT
-
¡û
>C191219340
LR215980
Bacteroidota
Paraprevotella xylaniphila YIT 11841 [LR215980]
2630047
2629973
-
Ile
GAT
-
¡û
>C191219346
LR215980
Bacteroidota
Paraprevotella xylaniphila YIT 11841 [LR215980]
2147583
2147509
-
Ile
GAT
-
¡û
>C191219348
LR215980
Bacteroidota
Paraprevotella xylaniphila YIT 11841 [LR215980]
2031993
2031919
-
Ile
GAT
-
¡û
>C191219351
LR215980
Bacteroidota
Paraprevotella xylaniphila YIT 11841 [LR215980]
1964155
1964081
-
Ile
GAT
-
¡û
>C191219361
LR215980
Bacteroidota
Paraprevotella xylaniphila YIT 11841 [LR215980]
924918
924844
-
Ile
GAT
-
¡û
>W1810427446
PYXG01000001
Bacteroidota
Prevotella sp. oral taxon 376 oral taxon 376 F0043 [PYXG]
1347887
1347961
+
Ile
GAT
[ENA]
¡û
>W1810427455
PYXG01000001
Bacteroidota
Prevotella sp. oral taxon 376 oral taxon 376 F0043 [PYXG]
1838930
1839004
+
Ile
GAT
[ENA]
¡û
>W1810427476
PYXG01000002
Bacteroidota
Prevotella sp. oral taxon 376 oral taxon 376 F0043 [PYXG]
527466
527392
-
Ile
GAT
[ENA]
¡û
>W1810427486
PYXG01000003
Bacteroidota
Prevotella sp. oral taxon 376 oral taxon 376 F0043 [PYXG]
286421
286495
+
Ile
GAT
[ENA]
¡û
>WENV085696
BABD01006818
Gut microbiome of Human (healthy human sample In-D, Adult, Male)
1039
1115
+
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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