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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.231799 (8 seq.)
>WENV180619157
OCQB01001785
[OCQB] human gut metagenome; human gut
4382
4458
+
Arg
CCT
[ENA]
¡û
>WENV183145222
OLOL01055221
[OLOL] human gut metagenome; faeces
588
664
+
Arg
CCT
[ENA]
¡û
>WENV183175294
OLPF01000141
[OLPF] human gut metagenome; faeces
5553
5629
+
Arg
CCT
[ENA]
¡û
>WENV183278627
OLSA01029305
[OLSA] human gut metagenome; faeces
1683
1607
-
Arg
CCT
[ENA]
¡û
>WENV183389110
OLZA01007394
[OLZA] human gut metagenome; feces
1429
1505
+
Arg
CCT
[ENA]
¡û
>WENV183389972
OLZB01003197
[OLZB] human gut metagenome; feces
3000
2924
-
Arg
CCT
[ENA]
¡û
>WENV183420137
OMBA01000455
[OMBA] human gut metagenome; feces
1459
1535
+
Arg
CCT
[ENA]
¡û
>WENV183488211
OMFY01006914
[OMFY] human gut metagenome; feces
1043
967
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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