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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.232078 (114 seq.)
>W1710873080
LMMN01000003
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
166678
166601
-
Met
CAT
[ENA]
¡û
>W1710873081
LMMN01000003
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
166579
166503
-
Met
CAT
[ENA]
¡û
>W1710873097
LMMN01000014
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
393
470
+
Met
CAT
[ENA]
¡û
>W1710873098
LMMN01000014
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
494
570
+
Met
CAT
[ENA]
¡û
>W1710873100
LMMN01000016
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
158
234
+
Met
CAT
[ENA]
¡û
>W1710873111
LMMN01000028
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
86
162
+
Met
CAT
[ENA]
¡û
>W1710874345
LMNN01000014
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
5624
5700
+
Met
CAT
[ENA]
¡û
>W1710874434
LMNP01000018
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
5738
5814
+
Met
CAT
[ENA]
¡û
>W1710874460
LMNQ01000001
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
578382
578458
+
Met
CAT
[ENA]
¡û
>W1710874554
LMNS01000002
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
167308
167232
-
Met
CAT
[ENA]
¡û
>W1710874570
LMNS01000021
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
16
92
+
Met
CAT
[ENA]
¡û
>W1710874580
LMNS01000034
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
256910
256834
-
Met
CAT
[ENA]
¡û
>W1710878022
LMQP01000001
Alphaproteobacteria
Sphingomonas sp. Leaf412 [LMQP]
694109
694185
+
Met
CAT
[ENA]
¡û
>W1710878288
LMQV01000007
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
143089
143013
-
Met
CAT
[ENA]
¡û
>W1710878295
LMQV01000014
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
455
531
+
Met
CAT
[ENA]
¡û
>W1710878302
LMQV01000029
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
167
243
+
Met
CAT
[ENA]
¡û
>W1710878317
LMQV01000042
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
350
426
+
Met
CAT
[ENA]
¡û
>W1711078704
LSNC01000079
Alphaproteobacteria
Methylorubrum populi [LSNC]
5686
5762
+
Met
CAT
[ENA]
¡û
>W1711078715
LSNC01000113
Alphaproteobacteria
Methylorubrum populi [LSNC]
35102
35026
-
Met
CAT
[ENA]
¡û
>C171092126
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
67160
67236
+
Met
CAT
-
¡û
>C171092129
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
89417
89493
+
Met
CAT
-
¡û
>C171092133
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
588705
588781
+
Met
CAT
-
¡û
>C171092136
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
839495
839571
+
Met
CAT
-
¡û
>C171092140
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
1045531
1045607
+
Met
CAT
-
¡û
>C171115207
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
3083747
3083671
-
Met
CAT
-
¡û
>C171115210
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
3061465
3061389
-
Met
CAT
-
¡û
>C171115214
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
2534798
2534722
-
Met
CAT
-
¡û
>C171115217
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
2326234
2326158
-
Met
CAT
-
¡û
>C171115221
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
2055278
2055202
-
Met
CAT
-
¡û
>WENV180353949
OBLQ011225367
[OBLQ] soil metagenome; soil
50
126
+
fMet
CAT
[ENA]
¢þ
>WENV181227843
OFDN01057503
[OFDN] hot springs metagenome; Water
444
520
+
fMet
CAT
[ENA]
¢þ
>WENV181231865
OFEK01078167
[OFEK] activated sludge metagenome; Anaerobic digester
551
627
+
fMet
CAT
[ENA]
¢þ
>C08006515
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
1530099
1530026
-
Met
CAT
[Ensembl]
¡û
>C08006519
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
1109114
1109041
-
Met
CAT
[Ensembl]
¡û
>C08006522
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
1086773
1086700
-
Met
CAT
[Ensembl]
¡û
>C08006525
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
877147
877074
-
Met
CAT
[Ensembl]
¡û
>C08006529
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
640802
640729
-
Met
CAT
[Ensembl]
¡û
>C08006664
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
1449699
1449626
-
Met
CAT
[Ensembl]
¡û
>C08006667
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
1426820
1426747
-
Met
CAT
[Ensembl]
¡û
>C08006670
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
1011768
1011695
-
Met
CAT
[Ensembl]
¡û
>C08006673
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
759571
759498
-
Met
CAT
[Ensembl]
¡û
>C08006677
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
602721
602648
-
Met
CAT
[Ensembl]
¡û
>WENV170662345
JXWW01044296
[JXWW] soil metagenome; rice field; organic GM Plot
431
355
-
Met
CAT
[ENA]
¢þ
>WENV170977189
MTKZ01018366
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5822
5898
+
Met
CAT
[ENA]
¢þ
>C181000377
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
1505846
1505770
-
Met
CAT
-
¡û
>C181000380
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
1111981
1111905
-
Met
CAT
-
¡û
>C181000383
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
851128
851052
-
Met
CAT
-
¡û
>C181000386
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
827591
827515
-
Met
CAT
-
¡û
>C181000390
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
642464
642388
-
Met
CAT
-
¡û
>C181175663
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
1650382
1650306
-
Met
CAT
-
¡û
>C181175666
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
1626920
1626844
-
Met
CAT
-
¡û
>C181175670
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
927980
927904
-
Met
CAT
-
¡û
>C181175673
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
700061
699985
-
Met
CAT
-
¡û
>C181175677
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
523566
523490
-
Met
CAT
-
¡û
>C181227841
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
4396830
4396906
+
Met
CAT
-
¡û
>C181227844
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
4419087
4419163
+
Met
CAT
-
¡û
>C181227848
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
4865269
4865345
+
Met
CAT
-
¡û
>C181227851
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
5087186
5087262
+
Met
CAT
-
¡û
>C181227855
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
5369937
5370013
+
Met
CAT
-
¡û
>W09106860
ABEC01000006
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
520
596
+
Met
CAT
[ENA]
¡û
>W09106864
ABEC01000006
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
438982
439058
+
Met
CAT
[ENA]
¡û
>W09106870
ABEC01000010
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
177
253
+
Met
CAT
[ENA]
¡û
>W09106873
ABEC01000012
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
106268
106192
-
Met
CAT
[ENA]
¡û
>W09106876
ABEC01000014
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
514
590
+
Met
CAT
[ENA]
¡û
>W09106878
ABEC01000016
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
41
117
+
Met
CAT
[ENA]
¡û
>C09107444
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
1635117
1635041
-
Met
CAT
[Ensembl]
¡û
>C09107448
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
1155521
1155445
-
Met
CAT
[Ensembl]
¡û
>C09107451
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
778162
778086
-
Met
CAT
[Ensembl]
¡û
>C09107454
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
755816
755740
-
Met
CAT
[Ensembl]
¡û
>C09107458
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
586234
586158
-
Met
CAT
[Ensembl]
¡û
>C09107531
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
1899284
1899208
-
Met
CAT
[Ensembl]
¡û
>C09107535
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
1357616
1357540
-
Met
CAT
[Ensembl]
¡û
>C09107538
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
1335359
1335283
-
Met
CAT
[Ensembl]
¡û
>C09107541
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
857165
857089
-
Met
CAT
[Ensembl]
¡û
>C09107545
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
526237
526161
-
Met
CAT
[Ensembl]
¡û
>C09107632
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
1251408
1251332
-
Met
CAT
[Ensembl]
¡û
>C09107635
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
1229048
1228972
-
Met
CAT
[Ensembl]
¡û
>C09107639
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
814016
813940
-
Met
CAT
[Ensembl]
¡û
>C09107642
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
601840
601764
-
Met
CAT
[Ensembl]
¡û
>C09107646
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
428598
428522
-
Met
CAT
[Ensembl]
¡û
>W1810658543
QJJJ01000009
Alphaproteobacteria
Methylobacterium sp. B4 [QJJJ]
189966
189890
-
Met
CAT
[ENA]
¡û
>SRA1015314
SRR023846.13241
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
69
145
+
Met
CAT
[SRA]
>SRA1015931
SRR023846.268464
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
73
149
+
Met
CAT
[SRA]
>C161004991
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
1300836
1300760
-
Met
CAT
[Ensembl]
¡û
>C161004994
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
1281086
1281010
-
Met
CAT
[Ensembl]
¡û
>C161004998
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
842618
842542
-
Met
CAT
[Ensembl]
¡û
>C161005001
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
586467
586391
-
Met
CAT
[Ensembl]
¡û
>C161005005
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
396019
395943
-
Met
CAT
[Ensembl]
¡û
>W121010688
AGJK01000112
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
16516
16592
+
Met
CAT
[ENA]
¡û
>W121010698
AGJK01000208
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
365
441
+
Met
CAT
[ENA]
¡û
>W121010704
AGJK01000606
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
240
316
+
Met
CAT
[ENA]
¡û
>W1610043182
BAZP01000549
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
1861
1937
+
Met
CAT
[ENA]
¡û
>W1610735443
LMMN01000014
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
393
470
+
Met
CAT
[ENA]
¡û
>W1610735444
LMMN01000014
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
494
570
+
Met
CAT
[ENA]
¡û
>W1610735446
LMMN01000016
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
158
234
+
Met
CAT
[ENA]
¡û
>W1610735457
LMMN01000028
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
86
162
+
Met
CAT
[ENA]
¡û
>W1610736691
LMNN01000014
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
5624
5700
+
Met
CAT
[ENA]
¡û
>W1610736780
LMNP01000018
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
5738
5814
+
Met
CAT
[ENA]
¡û
>W1610736806
LMNQ01000001
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
578382
578458
+
Met
CAT
[ENA]
¡û
>W1610736900
LMNS01000002
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
167308
167232
-
Met
CAT
[ENA]
¡û
>W1610736916
LMNS01000021
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
16
92
+
Met
CAT
[ENA]
¡û
>W1610736926
LMNS01000034
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
256910
256834
-
Met
CAT
[ENA]
¡û
>W1610740368
LMQP01000001
Alphaproteobacteria
Sphingomonas sp. Leaf412 [LMQP]
694109
694185
+
Met
CAT
[ENA]
¡û
>W1610740634
LMQV01000007
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
143089
143013
-
Met
CAT
[ENA]
¡û
>W1610740641
LMQV01000014
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
455
531
+
Met
CAT
[ENA]
¡û
>W1610740648
LMQV01000029
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
167
243
+
Met
CAT
[ENA]
¡û
>W1610740663
LMQV01000042
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
350
426
+
Met
CAT
[ENA]
¡û
>W1610917614
LSNC01000079
Alphaproteobacteria
Methylorubrum populi [LSNC]
5686
5762
+
Met
CAT
[ENA]
¡û
>W1610917625
LSNC01000113
Alphaproteobacteria
Methylorubrum populi [LSNC]
35102
35026
-
Met
CAT
[ENA]
¡û
>W1710040342
BAZP01000549
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
1861
1937
+
Met
CAT
[ENA]
¡û
>W1710567530
FOSV01000003
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
332668
332592
-
Met
CAT
[ENA]
¡û
>W1710567550
FOSV01000012
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
390
466
+
Met
CAT
[ENA]
¡û
>W1710567560
FOSV01000021
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
81954
81878
-
Met
CAT
[ENA]
¡û
>W1710567563
FOSV01000024
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
219
295
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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