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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.232298 (28 seq.)
>C171131104
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
43745
43821
+
Arg
ACG
-
¡û
>W131195004
ASRV01000092
Bacillota
Clostridium sartagoforme AAU1 [ASRV]
60222
60146
-
Arg
ACG
[ENA]
¡û
>W131252527
CBML010000007
Bacillota
Clostridium chauvoei JF4335 [CBML]
23429
23505
+
Arg
ACG
[ENA]
¡û
>WENV180180685
OAWL01000680
[OAWL] human gut metagenome; faeces
1154
1230
+
Arg
ACG
[ENA]
¢þ
>WENV180415544
OBVE01003673
[OBVE] human gut metagenome; faeces
658
734
+
Arg
ACG
[ENA]
¢þ
>WENV180489059
OBZR01009276
[OBZR] human gut metagenome; faeces
128
52
-
Arg
ACG
[ENA]
¢þ
>WENV180761160
ODHZ01005416
[ODHZ] human metagenome; G_DNA_Stool
2338
2262
-
Arg
ACG
[ENA]
¢þ
>W141083161
AUPH01003480
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
178
102
-
Arg
ACG
[ENA]
¡û
>WENV181807771
OGSQ01000121
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
36351
36275
-
Arg
ACG
[ENA]
¢þ
>WENV181807923
OGSQ01001228
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
1129
1205
+
Arg
ACG
[ENA]
¢þ
>WENV181809512
OGST01000379
[OGST] human gut metagenome; fecal sample 7 from infant 6
24427
24351
-
Arg
ACG
[ENA]
¢þ
>WENV181814852
OGTH01000627
[OGTH] human gut metagenome; fecal sample 4 from infant 6
3668
3744
+
Arg
ACG
[ENA]
¢þ
>WENV181817473
OGTN01000167
[OGTN] human gut metagenome; fecal sample 5 from infant 4
32988
32912
-
Arg
ACG
[ENA]
¢þ
>WENV181818991
OGTU01001822
[OGTU] human gut metagenome; fecal sample 6 from infant 4
7
83
+
Arg
ACG
[ENA]
¢þ
>WENV182405907
OIEX01000009
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
24813
24889
+
Arg
ACG
[ENA]
¢þ
>WENV182807226
OJVV01005052
[OJVV] human gut metagenome; human gut
613
689
+
Arg
ACG
[ENA]
¢þ
>WENV182832975
OKEP01005710
[OKEP] human gut metagenome; human gut
125
49
-
Arg
ACG
[ENA]
¢þ
>WENV182844370
OKIR01005459
[OKIR] human gut metagenome; human gut
742
818
+
Arg
ACG
[ENA]
¢þ
>C181031725
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
43331
43407
+
Arg
ACG
-
¡û
>C181031954
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
43335
43411
+
Arg
ACG
-
¡û
>C191012367
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
40574
40650
+
Arg
ACG
-
¡û
>C191025594
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
1787864
1787940
+
Arg
ACG
-
¡û
>C191051220
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
43745
43821
+
Arg
ACG
-
¡û
>C191123789
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
563502
563578
+
Arg
ACG
-
¡û
>W09118966
ACDK01000084
Bacillota
Clostridium sp. 7_2_43FAA [ACDK]
5231
5307
+
Arg
ACG
[ENA]
¡û
>W1911491436
OAOE01000031
Bacillota
Clostridium tertium [OAOE]
13374
13298
-
Arg
ACG
[ENA]
¡û
>W1911493933
OBJV01000006
Bacillota
Clostridium tertium [OBJV]
205441
205365
-
Arg
ACG
[ENA]
¡û
>W1810605030
QGMV01000017
Bacillota
Clostridium tertium Gcol.A2 [QGMV]
25155
25231
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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