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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.232520 (49 seq.)
>WENV180006068
FLRX01127471
[FLRX] metagenome; saliva
24
100
+
Arg
CCG
[ENA]
¡û
>WENV180240991
OBDF01001738
[OBDF] human oral metagenome; human oral
458
382
-
Arg
CCG
[ENA]
¡û
>WENV180726594
ODGU01000150
[ODGU] human metagenome; G_DNA_Supragingival plaque
20331
20255
-
Arg
CCG
[ENA]
¡û
>WENV180750096
ODHS01000440
[ODHS] human metagenome; G_DNA_Supragingival plaque
22136
22060
-
Arg
CCG
[ENA]
¡û
>WENV180750501
ODHS01002936
[ODHS] human metagenome; G_DNA_Supragingival plaque
3028
2952
-
Arg
CCG
[ENA]
¡û
>WENV180795835
ODJB01000372
[ODJB] human metagenome; G_DNA_Supragingival plaque
20245
20169
-
Arg
CCG
[ENA]
¡û
>WENV180803670
ODJG01000018
[ODJG] human metagenome; G_DNA_Supragingival plaque
68793
68869
+
Arg
CCG
[ENA]
¡û
>WENV180808539
ODJK01000184
[ODJK] human metagenome; G_DNA_Subgingival plaque
5321
5397
+
Arg
CCG
[ENA]
¡û
>WENV180824186
ODJX01001286
[ODJX] human metagenome; G_DNA_Supragingival plaque
971
1047
+
Arg
CCG
[ENA]
¡û
>WENV180832646
ODKC01002892
[ODKC] human metagenome; G_DNA_Supragingival plaque
9373
9449
+
Arg
CCG
[ENA]
¡û
>WENV180846053
ODKT01004421
[ODKT] human metagenome; G_DNA_Supragingival plaque
2871
2795
-
Arg
CCG
[ENA]
¡û
>WENV180888340
ODMN01000510
[ODMN] human metagenome; G_DNA_Supragingival plaque
4956
5032
+
Arg
CCG
[ENA]
¡û
>WENV180888352
ODMN01000559
[ODMN] human metagenome; G_DNA_Supragingival plaque
12003
11927
-
Arg
CCG
[ENA]
¡û
>WENV180888540
ODMN01001524
[ODMN] human metagenome; G_DNA_Supragingival plaque
11028
10952
-
Arg
CCG
[ENA]
¡û
>WENV180923466
ODTK01000002
[ODTK] human metagenome; G_DNA_Supragingival plaque
76542
76618
+
Arg
CCG
[ENA]
¡û
>WENV180923553
ODTK01000021
[ODTK] human metagenome; G_DNA_Supragingival plaque
33728
33804
+
Arg
CCG
[ENA]
¡û
>WENV180937780
ODTX01000074
[ODTX] human metagenome; G_DNA_Supragingival plaque
19202
19278
+
Arg
CCG
[ENA]
¡û
>WENV180938149
ODTX01000745
[ODTX] human metagenome; G_DNA_Supragingival plaque
12680
12756
+
Arg
CCG
[ENA]
¡û
>WENV180949679
ODUG01029002
[ODUG] human metagenome; G_DNA_Tongue dorsum
1270
1194
-
Arg
CCG
[ENA]
¡û
>WENV180950963
ODUH01005093
[ODUH] human metagenome; G_DNA_Subgingival plaque
3139
3215
+
Arg
CCG
[ENA]
¡û
>WENV180951055
ODUH01007562
[ODUH] human metagenome; G_DNA_Subgingival plaque
3180
3104
-
Arg
CCG
[ENA]
¡û
>WENV180951339
ODUH01018126
[ODUH] human metagenome; G_DNA_Subgingival plaque
1324
1248
-
Arg
CCG
[ENA]
¡û
>WENV180980870
ODVE01002946
[ODVE] human metagenome; G_DNA_Supragingival plaque
4164
4240
+
Arg
CCG
[ENA]
¡û
>WENV180981376
ODVE01019265
[ODVE] human metagenome; G_DNA_Supragingival plaque
68
144
+
Arg
CCG
[ENA]
¡û
>WENV180998245
ODVT01000113
[ODVT] human metagenome; G_DNA_Buccal mucosa
36505
36581
+
Arg
CCG
[ENA]
¡û
>WENV180998460
ODVT01000425
[ODVT] human metagenome; G_DNA_Buccal mucosa
10872
10796
-
Arg
CCG
[ENA]
¡û
>WENV181063124
ODYP01000091
[ODYP] human metagenome; G_DNA_Supragingival plaque
3952
4028
+
Arg
CCG
[ENA]
¡û
>WENV181063135
ODYP01000094
[ODYP] human metagenome; G_DNA_Supragingival plaque
33341
33265
-
Arg
CCG
[ENA]
¡û
>WENV181066398
ODZI01000013
[ODZI] human metagenome; G_DNA_Supragingival plaque
35567
35491
-
Arg
CCG
[ENA]
¡û
>WENV181075975
OEAP01000977
[OEAP] human metagenome; G_DNA_Supragingival plaque
8880
8956
+
Arg
CCG
[ENA]
¡û
>WENV181121860
OEFL01024129
[OEFL] human metagenome; G_DNA_Supragingival plaque
1024
948
-
Arg
CCG
[ENA]
¡û
>WENV181125411
OEFT01094996
[OEFT] human metagenome; G_DNA_Tongue dorsum
20
96
+
Arg
CCG
[ENA]
¡û
>WENV181137415
OEGJ01003339
[OEGJ] human metagenome; G_DNA_Supragingival plaque
4662
4738
+
Arg
CCG
[ENA]
¡û
>WENV181178999
OEJT01000899
[OEJT] human metagenome; G_DNA_Supragingival plaque
7817
7893
+
Arg
CCG
[ENA]
¡û
>WENV181182943
OEJV01085112
[OEJV] human metagenome; G_DNA_Supragingival plaque
145
69
-
Arg
CCG
[ENA]
¡û
>WENV181375981
OFQZ01010090
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
1173
1249
+
Arg
CCG
[ENA]
¡û
>WENV181920233
OGYI01057477
[OGYI] human gut metagenome; faeces
86
10
-
Arg
CCG
[ENA]
¡û
>WENV183508013
OMHA01001684
[OMHA] human oral metagenome; human oral
774
698
-
Arg
CCG
[ENA]
¡û
>WENV183508788
OMHF01004086
[OMHF] human oral metagenome; human oral
707
631
-
Arg
CCG
[ENA]
¡û
>C191173883
CP040008
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 955 PM004 [CP040008]
679978
680054
+
Arg
CCG
-
¡û
>C191173924
CP040011
Unclassified
TM7 phylum sp. oral taxon 952 TM7x [CP040011]
565699
565775
+
Arg
CCG
-
¡û
>C151025494
CP007496
Unclassified
Candidatus Nanosynbacter lyticus TM7x [CP007496]
565657
565733
+
Arg
CCG
[Ensembl]
¡û
>W2011218727
PQOA01000160
Unclassified
Candidatus Saccharibacteria bacterium TM7_G1_3_12A [PQOA]
719
643
-
Arg
CCG
[ENA]
¡û
>C201082671
CP039997
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 488 CM010 [CP039997]
641552
641628
+
Arg
CCG
-
¡û
>C201082756
CP039999
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 488 CM001 [CP039999]
661202
661278
+
Arg
CCG
-
¡û
>C201082840
CP040001
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 488 CM006 [CP040001]
698962
699038
+
Arg
CCG
-
¡û
>C201082882
CP040002
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 488 AC002 [CP040002]
645410
645486
+
Arg
CCG
-
¡û
>C201295061
CP058260
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 488 HB001 [CP058260]
645383
645459
+
Arg
CCG
-
¡û
>C211197774
CP064995
Unclassified
Candidatus Saccharibacteria bacterium [CP064995]
105252
105176
-
Arg
CCG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK