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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.232561 (112 seq.)
>W1711459354
MJDN01000002
Bacillota
Enterococcus hirae [MJDN]
3496
3571
+
Met
CAT
[ENA]
¡û
>W1711459397
MJDO01000013
Bacillota
Enterococcus hirae [MJDO]
425283
425208
-
Met
CAT
[ENA]
¡û
>W1711459594
MJDR01000002
Bacillota
Enterococcus hirae [MJDR]
653
730
+
Met
CAT
[ENA]
¡û
>W1711459636
MJDR01000011
Bacillota
Enterococcus hirae [MJDR]
617
692
+
Met
CAT
[ENA]
¡û
>W1711459815
MJDV01000001
Bacillota
Enterococcus hirae [MJDV]
58163
58238
+
Met
CAT
[ENA]
¡û
>W1711643238
MPZY01000167
Bacillota
Enterococcus faecium [MPZY]
219
146
-
Met
CAT
[ENA]
¡û
>W1711643424
MQAB01000202
Bacillota
Enterococcus faecium [MQAB]
219
146
-
Met
CAT
[ENA]
¡û
>W1711659033
MQRF01000201
Bacillota
Enterococcus faecium [MQRF]
1848
1921
+
Met
CAT
[ENA]
¡û
>W1711659035
MQRF01000201
Bacillota
Enterococcus faecium [MQRF]
88581
88654
+
Met
CAT
[ENA]
¡û
>W1711683325
MRYH01000257
Bacillota
Enterococcus faecium [MRYH]
276
203
-
Met
CAT
[ENA]
¡û
>W1711800196
MXAU01000189
Bacillota
Enterococcus faecium [MXAU]
89
162
+
Met
CAT
[ENA]
¡û
>W1712017506
NETE01000001
Bacillota
Enterococcus faecium [NETE]
183504
183431
-
Met
CAT
[ENA]
¡û
>W1712017508
NETE01000001
Bacillota
Enterococcus faecium [NETE]
93293
93220
-
Met
CAT
[ENA]
¡û
>W1712017532
NETE01000004
Bacillota
Enterococcus faecium [NETE]
63372
63445
+
Met
CAT
[ENA]
¡û
>W1712069424
NGMI01000002
Bacillota
Enterococcus faecium [NGMI]
351357
351430
+
Met
CAT
[ENA]
¡û
>W131009265
AHXP01000002
Bacillota
Enterococcus faecium E1861 [AHXP]
406878
406805
-
Met
CAT
[ENA]
¡û
>W131009192
AHXO01000006
Bacillota
Enterococcus faecium E1731 [AHXO]
136917
136990
+
Met
CAT
[ENA]
¡û
>WENV180175052
OAWB01004571
[OAWB] human gut metagenome; faeces
1226
1153
-
Ile2
CAT
[ENA]
¢þ
>WENV180453406
OBXM01000088
[OBXM] human gut metagenome; faeces
120436
120363
-
Ile2
CAT
[ENA]
¢þ
>WENV181558598
OGIX01006578
[OGIX] metagenome; Human gut stool
1454
1527
+
Ile2
CAT
[ENA]
¢þ
>WENV182594717
OJIW01000121
[OJIW] metagenome; faeces
10884
10811
-
Ile2
CAT
[ENA]
¢þ
>WENV182594735
OJIW01000758
[OJIW] metagenome; faeces
1019
1092
+
Ile2
CAT
[ENA]
¢þ
>WENV170560534
CYGL01005285
[CYGL] human gut metagenome;
567
642
+
Met
CAT
[ENA]
¢þ
>C181090737
CP023808
Bacillota
Enterococcus faecium Efaecium_ER04526.3A [CP023808]
883378
883451
+
Met
CAT
-
¡û
>C181090793
CP023808
Bacillota
Enterococcus faecium Efaecium_ER04526.3A [CP023808]
2550257
2550184
-
Met
CAT
-
¡û
>C191145102
CP035660
Bacillota
Enterococcus faecium UAMSEF_09 [CP035660]
828479
828552
+
Met
CAT
-
¡û
>C191145104
CP035660
Bacillota
Enterococcus faecium UAMSEF_09 [CP035660]
923116
923189
+
Met
CAT
-
¡û
>C191145146
CP035660
Bacillota
Enterococcus faecium UAMSEF_09 [CP035660]
2611004
2610931
-
Met
CAT
-
¡û
>C191145154
CP035660
Bacillota
Enterococcus faecium UAMSEF_09 [CP035660]
1805081
1805008
-
Met
CAT
-
¡û
>C191145173
CP035666
Bacillota
Enterococcus faecium UAMSEF_20 [CP035666]
828484
828557
+
Met
CAT
-
¡û
>C191145175
CP035666
Bacillota
Enterococcus faecium UAMSEF_20 [CP035666]
921578
921651
+
Met
CAT
-
¡û
>C191145230
CP035666
Bacillota
Enterococcus faecium UAMSEF_20 [CP035666]
2610978
2610905
-
Met
CAT
-
¡û
>C191145238
CP035666
Bacillota
Enterococcus faecium UAMSEF_20 [CP035666]
1803531
1803458
-
Met
CAT
-
¡û
>C191215904
LR135287
Bacillota
Enterococcus faecium [LR135287]
795359
795432
+
Met
CAT
-
¡û
>C191215906
LR135287
Bacillota
Enterococcus faecium [LR135287]
885684
885757
+
Met
CAT
-
¡û
>C191215962
LR135287
Bacillota
Enterococcus faecium [LR135287]
2592400
2592327
-
Met
CAT
-
¡û
>C191216252
LR135324
Bacillota
Enterococcus faecium [LR135324]
864994
865067
+
Met
CAT
-
¡û
>C191216253
LR135324
Bacillota
Enterococcus faecium [LR135324]
904702
904775
+
Met
CAT
-
¡û
>C191216459
LR135344
Bacillota
Enterococcus faecium [LR135344]
860008
860081
+
Met
CAT
-
¡û
>C191216515
LR135344
Bacillota
Enterococcus faecium [LR135344]
2667654
2667581
-
Met
CAT
-
¡û
>C191216516
LR135344
Bacillota
Enterococcus faecium [LR135344]
2435703
2435630
-
Met
CAT
-
¡û
>C191217088
LR135414
Bacillota
Enterococcus faecium [LR135414]
819178
819251
+
Met
CAT
-
¡û
>C191217144
LR135414
Bacillota
Enterococcus faecium [LR135414]
2616469
2616396
-
Met
CAT
-
¡û
>C191217153
LR135414
Bacillota
Enterococcus faecium [LR135414]
1743762
1743689
-
Met
CAT
-
¡û
>W1910312954
FRYE01000002
Bacillota
Enterococcus faecium [FRYE]
254703
254776
+
Met
CAT
[ENA]
¡û
>W1910472178
FXEJ01000114
Bacillota
Enterococcus faecium VREN2770 [FXEJ]
1664
1737
+
Met
CAT
[ENA]
¡û
>W1910472302
FXEL01000115
Bacillota
Enterococcus faecium VREN2617 [FXEL]
977
904
-
Met
CAT
[ENA]
¡û
>W1910474356
FXFT01000018
Bacillota
Enterococcus faecium VREN2830 [FXFT]
1657
1730
+
Met
CAT
[ENA]
¡û
>W1910475269
FXGI01000002
Bacillota
Enterococcus faecium VREN3242 [FXGI]
866
793
-
Met
CAT
[ENA]
¡û
>W1910475311
FXGI01000116
Bacillota
Enterococcus faecium VREN3242 [FXGI]
1664
1737
+
Met
CAT
[ENA]
¡û
>W1910476064
FXGU01000089
Bacillota
Enterococcus faecium VREN3290 [FXGU]
979
906
-
Met
CAT
[ENA]
¡û
>W1910476300
FXGY01000123
Bacillota
Enterococcus faecium VREN1631 [FXGY]
977
904
-
Met
CAT
[ENA]
¡û
>W1910476322
FXGY01000181
Bacillota
Enterococcus faecium VREN1631 [FXGY]
329
402
+
Met
CAT
[ENA]
¡û
>W1910477340
FXHP01000137
Bacillota
Enterococcus faecium VREN1371 [FXHP]
977
904
-
Met
CAT
[ENA]
¡û
>W1910477361
FXHP01000199
Bacillota
Enterococcus faecium VREN1371 [FXHP]
207
134
-
Met
CAT
[ENA]
¡û
>W1910478932
FXIP01000131
Bacillota
Enterococcus faecium VREN1798 [FXIP]
1657
1730
+
Met
CAT
[ENA]
¡û
>W1910478954
FXIP01000185
Bacillota
Enterococcus faecium VREN1798 [FXIP]
219
146
-
Met
CAT
[ENA]
¡û
>W1910478993
FXIQ01000120
Bacillota
Enterococcus faecium VREN1779 [FXIQ]
985
912
-
Met
CAT
[ENA]
¡û
>W1910479015
FXIQ01000171
Bacillota
Enterococcus faecium VREN1779 [FXIQ]
211
138
-
Met
CAT
[ENA]
¡û
>W1910479176
FXIT01000137
Bacillota
Enterococcus faecium VREN1801 [FXIT]
1664
1737
+
Met
CAT
[ENA]
¡û
>W1910479197
FXIT01000192
Bacillota
Enterococcus faecium VREN1801 [FXIT]
327
400
+
Met
CAT
[ENA]
¡û
>W1910479972
FXJG01000129
Bacillota
Enterococcus faecium VREN1812 [FXJG]
1666
1739
+
Met
CAT
[ENA]
¡û
>W1910479994
FXJG01000182
Bacillota
Enterococcus faecium VREN1812 [FXJG]
215
142
-
Met
CAT
[ENA]
¡û
>W1910480874
FXJV01000034
Bacillota
Enterococcus faecium VREN1780 [FXJV]
33129
33202
+
Met
CAT
[ENA]
¡û
>W1910480907
FXJV01000119
Bacillota
Enterococcus faecium VREN1780 [FXJV]
1661
1734
+
Met
CAT
[ENA]
¡û
>W1910481368
FXKD01000032
Bacillota
Enterococcus faecium VREN3656 [FXKD]
2154
2081
-
Met
CAT
[ENA]
¡û
>W1910481392
FXKD01000092
Bacillota
Enterococcus faecium VREN3656 [FXKD]
4168
4241
+
Met
CAT
[ENA]
¡û
>W1910482361
FXKT01000034
Bacillota
Enterococcus faecium VREN3641 [FXKT]
2869
2796
-
Met
CAT
[ENA]
¡û
>W1910482386
FXKT01000097
Bacillota
Enterococcus faecium VREN3641 [FXKT]
981
908
-
Met
CAT
[ENA]
¡û
>W1910482734
FXKZ01000033
Bacillota
Enterococcus faecium VREN3643 [FXKZ]
2868
2795
-
Met
CAT
[ENA]
¡û
>W1910482759
FXKZ01000092
Bacillota
Enterococcus faecium VREN3643 [FXKZ]
986
913
-
Met
CAT
[ENA]
¡û
>W1910482796
FXLA01000034
Bacillota
Enterococcus faecium VREN2172 [FXLA]
33674
33747
+
Met
CAT
[ENA]
¡û
>W1910482826
FXLA01000120
Bacillota
Enterococcus faecium VREN2172 [FXLA]
985
912
-
Met
CAT
[ENA]
¡û
>W1910609417
LERR01000005
Bacillota
Enterococcus faecium 74EA1 [LERR]
171414
171341
-
Met
CAT
[ENA]
¡û
>W1910609970
LESA01000007
Bacillota
Enterococcus hirae 104EA1 [LESA]
2581
2656
+
Met
CAT
[ENA]
¡û
>W1910609974
LESA01000010
Bacillota
Enterococcus hirae 104EA1 [LESA]
15175
15250
+
Met
CAT
[ENA]
¡û
>W1910610480
LESJ01000005
Bacillota
Enterococcus hirae 88EA1 [LESJ]
608620
608545
-
Met
CAT
[ENA]
¡û
>W1911436774
NXPB01000072
Bacillota
Enterococcus faecium 4_Efcm_HA-NL [NXPB]
696
623
-
Met
CAT
[ENA]
¡û
>W1911537419
OMMW01000190
Bacillota
Enterococcus faecium [OMMW]
454
527
+
Met
CAT
[ENA]
¡û
>W1911537529
OMMY01000179
Bacillota
Enterococcus faecium [OMMY]
453
526
+
Met
CAT
[ENA]
¡û
>W1911538066
OMNH01000186
Bacillota
Enterococcus faecium [OMNH]
420
347
-
Met
CAT
[ENA]
¡û
>W1911703818
QOJL01000374
Bacillota
Enterococcus faecium IHC120 [QOJL]
11141
11066
-
Met
CAT
[ENA]
¡û
>W1911703972
QOJO01000104
Bacillota
Enterococcus faecium IHC128 [QOJO]
894
821
-
Met
CAT
[ENA]
¡û
>W1911704128
QOJQ01000144
Bacillota
Enterococcus faecium IHC25 [QOJQ]
773
700
-
Met
CAT
[ENA]
¡û
>W1911704151
QOJQ01000257
Bacillota
Enterococcus faecium IHC25 [QOJQ]
3248
3175
-
Met
CAT
[ENA]
¡û
>W1911704238
QOJS01000054
Bacillota
Enterococcus faecium IHC28 [QOJS]
188
261
+
Met
CAT
[ENA]
¡û
>W1911704275
QOJS01000296
Bacillota
Enterococcus faecium IHC28 [QOJS]
676
603
-
Met
CAT
[ENA]
¡û
>W1911704653
QOJZ01000008
Bacillota
Enterococcus faecium IHC19 [QOJZ]
268
195
-
Met
CAT
[ENA]
¡û
>W1911704662
QOJZ01000076
Bacillota
Enterococcus faecium IHC19 [QOJZ]
396
323
-
Met
CAT
[ENA]
¡û
>W1911704898
QOKD01000014
Bacillota
Enterococcus faecium IHC32 [QOKD]
4583
4656
+
Met
CAT
[ENA]
¡û
>W1911705221
QOKI01000029
Bacillota
Enterococcus faecium IHC38 [QOKI]
1454
1527
+
Met
CAT
[ENA]
¡û
>W1911705241
QOKI01000239
Bacillota
Enterococcus faecium IHC38 [QOKI]
81477
81550
+
Met
CAT
[ENA]
¡û
>W1911710767
QPRM01000002
Bacillota
Enterococcus faecium ARL08-552 [QPRM]
136850
136923
+
Met
CAT
[ENA]
¡û
>W1911711969
QPSQ01000152
Bacillota
Enterococcus faecium ARL07-1345 [QPSQ]
285
358
+
Met
CAT
[ENA]
¡û
>W1810060427
PDLZ01000035
Bacillota
Enterococcus faecium 993 [PDLZ]
803
730
-
Met
CAT
[ENA]
¡û
>W1810078391
PEJX02000074
Bacillota
Enterococcus faecium ET13_17 [PEJX]
25
98
+
Met
CAT
[ENA]
¡û
>W1810078423
PEJX02000211
Bacillota
Enterococcus faecium ET13_17 [PEJX]
25
98
+
Met
CAT
[ENA]
¡û
>W1810113888
PHLB01000001
Bacillota
Enterococcus faecium 15-162 [PHLB]
339259
339186
-
Met
CAT
[ENA]
¡û
>W1810310356
PTTT01000012
Bacillota
Enterococcus faecium CVM N60284F [PTTT]
3541
3466
-
Met
CAT
[ENA]
¡û
>W1810311636
PTUS01000011
Bacillota
Enterococcus mundtii CVM N59820F [PTUS]
11614
11689
+
Met
CAT
[ENA]
¡û
>W1810318397
PTZQ01000089
Bacillota
Enterococcus faecium CVM N54538 [PTZQ]
600
527
-
Met
CAT
[ENA]
¡û
>W10101153
ACJQ01000175
Bacillota
Enterococcus faecium C68 [ACJQ]
1160
1233
+
Met
CAT
[ENA]
¡û
>W10125844
AECI01000175
Bacillota
Enterococcus faecium TX0133B [AECI]
11117
11042
-
Met
CAT
[ENA]
¡û
>W10125865
AECJ01000137
Bacillota
Enterococcus faecium TX0133a01 [AECJ]
11117
11042
-
Met
CAT
[ENA]
¡û
>W11101309
ACJQ01000175
Bacillota
Enterococcus faecium C68 [ACJQ]
1160
1233
+
Met
CAT
[ENA]
¡û
>W1511356490
JRUH01000038
Bacillota
Enterococcus hirae 70-61-3 [JRUH]
1824
1899
+
Met
CAT
[ENA]
¡û
>W11132731
AECI01000175
Bacillota
Enterococcus faecium TX0133B [AECI]
11117
11042
-
Met
CAT
[ENA]
¡û
>W11132752
AECJ01000137
Bacillota
Enterococcus faecium TX0133a01 [AECJ]
11117
11042
-
Met
CAT
[ENA]
¡û
>W121121796
AMAP01000327
Bacillota
Enterococcus faecium P1123 [AMAP]
9002
8927
-
Met
CAT
[ENA]
¡û
>W121121370
AMAD01000192
Bacillota
Enterococcus faecium S447 [AMAD]
12357
12284
-
Met
CAT
[ENA]
¡û
>W1710743214
LGUK01000050
Bacillota
Enterococcus hirae 88-15-E09 [LGUK]
1326
1401
+
Met
CAT
[ENA]
¡û
>W1710762424
LIJA01000049
Bacillota
Enterococcus hirae 81-15-F4 [LIJA]
9523
9448
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK