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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23418 (18 seq.)
>W131169909
ARFC01000020
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
3967
3878
-
Ser
CGA
[ENA]
¡û
>W131169930
ARFD01000019
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
44810
44899
+
Ser
CGA
[ENA]
¡û
>W1711504017
MKUD01000072
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
229331
229244
-
Ser
CGA
[ENA]
¡û
>W1711769445
MVEC01000002
Bacteroidota
Spirosoma sp. 209 [MVEC]
33893
33804
-
Ser
CGA
[ENA]
¡û
>C171030754
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
1581256
1581167
-
Ser
CGA
-
¡û
>C171104405
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
4027350
4027263
-
Ser
CGA
-
¡û
>C171104447
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
4026120
4026031
-
Ser
CGA
-
¡û
>W131169829
ARFA01000036
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
81517
81606
+
Ser
CGA
[ENA]
¡û
>WENV170993494
MWWB01327238
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
2
93
+
Ser
CGA
[ENA]
¢þ
>C181113126
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
7981078
7981166
+
Ser
CGA
-
¡û
>W09109910
ABUR01000004
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
358507
358418
-
Ser
CGA
[ENA]
¡û
>W1911497268
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
2141712
2141624
-
Ser
CGA
[ENA]
¡û
>W1810364354
PVTE01000001
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
189064
189151
+
Ser
CGA
[ENA]
¡û
>W1810692107
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
1310170
1310083
-
Ser
CGA
[ENA]
¡û
>SRA1016126
SRR023846.357313
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
88
177
+
Ser
CGA
[SRA]
>C151068632
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
3097583
3097494
-
Ser
CGA
[Ensembl]
¡û
>C10111796
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
2703964
2703875
-
Ser
CGA
[Ensembl]
¡û
>W1710558212
FOLQ01000019
Bacteroidota
Spirosoma endophyticum [FOLQ]
62479
62566
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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