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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23431 (27 seq.)
>W131046129
AMSC01000010
Gammaproteobacteria
Kosakonia sacchari subsp. dissolvens SP1 [AMSC]
94295
94206
-
Ser
CGA
[ENA]
¡û
>W1711795435
MWPR01000035
Gammaproteobacteria
Kluyvera intermedia [MWPR]
5020
5109
+
Ser
CGA
[ENA]
¡û
>WENV181205867
OFAQ01002062
[OFAQ] metagenome; hydrothermal vent
526
437
-
Ser
CGA
[ENA]
¢þ
>WENV181801764
OGSC01000051
[OGSC] human gut metagenome; fecal sample 8 from infant 5
93594
93683
+
Ser
CGA
[ENA]
¢þ
>WENV181806588
OGSL01000158
[OGSL] human gut metagenome; fecal sample 6 from infant 5
4998
5087
+
Ser
CGA
[ENA]
¢þ
>WENV181814170
OGTF01000147
[OGTF] human gut metagenome; fecal sample 5 from infant 5
18145
18056
-
Ser
CGA
[ENA]
¢þ
>WENV181837277
OGVK01014411
[OGVK] freshwater metagenome; freshwater
399
488
+
Ser
CGA
[ENA]
¢þ
>WENV182408562
OIFF01000035
[OIFF] human gut metagenome; stool
94264
94353
+
Ser
CGA
[ENA]
¢þ
>WENV182412095
OIFS01000029
[OIFS] human gut metagenome; stool
55729
55640
-
Ser
CGA
[ENA]
¢þ
>WENV182413057
OIFX01000038
[OIFX] human gut metagenome; stool
94264
94353
+
Ser
CGA
[ENA]
¢þ
>WENV182833258
OKER01008103
[OKER] human gut metagenome; human gut
443
532
+
Ser
CGA
[ENA]
¢þ
>WENV182944869
OKVJ01002317
[OKVJ] human gut metagenome; human gut
1525
1436
-
Ser
CGA
[ENA]
¢þ
>WENV182953131
OKVX01006936
[OKVX] human gut metagenome; human gut
1196
1107
-
Ser
CGA
[ENA]
¢þ
>WENV182966248
OKWV01000071
[OKWV] human gut metagenome; stool
50236
50147
-
Ser
CGA
[ENA]
¢þ
>C181128795
CP026193
Gammaproteobacteria
Enterobacteriaceae bacterium ENNIH1 [CP026193]
1321739
1321828
+
Ser
CGA
-
¡û
>W1910498511
FXWP01000020
Gammaproteobacteria
Kosakonia pseudosacchari [FXWP]
28827
28738
-
Ser
CGA
[ENA]
¡û
>W1910932493
NITV01000001
Gammaproteobacteria
Kosakonia pseudosacchari NN143 [NITV]
211692
211781
+
Ser
CGA
[ENA]
¡û
>W1910932562
NITW01000001
Gammaproteobacteria
Kosakonia sacchari HX148 [NITW]
122084
122173
+
Ser
CGA
[ENA]
¡û
>W1810759778
QPJR01000004
Gammaproteobacteria
Kosakonia sp. AG348 [QPJR]
376555
376466
-
Ser
CGA
[ENA]
¡û
>W1810785331
QRBM01000008
Gammaproteobacteria
Escherichia coli 1-RC-17-04352 [QRBM]
49539
49450
-
Ser
CGA
[ENA]
¡û
>C151018788
CP007215
Gammaproteobacteria
Kosakonia sacchari SP1 [CP007215]
77832
77921
+
Ser
CGA
[Ensembl]
¡û
>C151085186
CP011602
Gammaproteobacteria
Phytobacter ursingii CAV1151 [CP011602]
1116497
1116586
+
Ser
CGA
[Ensembl]
¡û
>W1511546714
JZLI01000011
Gammaproteobacteria
Kosakonia oryzae KO348 [JZLI]
20802
20891
+
Ser
CGA
[ENA]
¡û
>C161096110
CP016337
Gammaproteobacteria
Kosakonia sacchari BO-1 [CP016337]
71019
71108
+
Ser
CGA
-
¡û
>C131016700
CP005991
Gammaproteobacteria
Enterobacter sp. R4-368 [CP005991]
1033508
1033419
-
Ser
CGA
[Ensembl]
¡û
>W1710506136
FMUI01000007
Gammaproteobacteria
Kosakonia sacchari [FMUI]
94516
94427
-
Ser
CGA
[ENA]
¡û
>W1710560020
FONB01000012
Gammaproteobacteria
Phytobacter palmae S29 [FONB]
63335
63246
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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