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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23436 (236 seq.)
>W1710888767
LMZZ01000013
Gammaproteobacteria
[Haemophilus] ducreyi [LMZZ]
35404
35493
+
Ser
GGA
[ENA]
¡û
>W1710998956
LQCY01000073
Gammaproteobacteria
Mannheimia haemolytica [LQCY]
12096
12185
+
Ser
GGA
[ENA]
¡û
>W1710999118
LQDD01000068
Gammaproteobacteria
Mannheimia haemolytica [LQDD]
12096
12185
+
Ser
GGA
[ENA]
¡û
>W1710999212
LQDF01000069
Gammaproteobacteria
Mannheimia haemolytica [LQDF]
12096
12185
+
Ser
GGA
[ENA]
¡û
>W1710999396
LQDK01000178
Gammaproteobacteria
Mannheimia haemolytica [LQDK]
12097
12186
+
Ser
GGA
[ENA]
¡û
>W1710999526
LQDN01000068
Gammaproteobacteria
Mannheimia haemolytica [LQDN]
12097
12186
+
Ser
GGA
[ENA]
¡û
>W1710999573
LQDO01000066
Gammaproteobacteria
Mannheimia haemolytica [LQDO]
12096
12185
+
Ser
GGA
[ENA]
¡û
>W1710999970
LQDZ01000047
Gammaproteobacteria
Mannheimia haemolytica [LQDZ]
12096
12185
+
Ser
GGA
[ENA]
¡û
>W1711000079
LQEB01000061
Gammaproteobacteria
Mannheimia haemolytica [LQEB]
12097
12186
+
Ser
GGA
[ENA]
¡û
>W1711000272
LQEG01000075
Gammaproteobacteria
Mannheimia haemolytica [LQEG]
12097
12186
+
Ser
GGA
[ENA]
¡û
>W1711000408
LQEJ01000058
Gammaproteobacteria
Mannheimia haemolytica [LQEJ]
12097
12186
+
Ser
GGA
[ENA]
¡û
>W1711000459
LQEK01000063
Gammaproteobacteria
Mannheimia haemolytica [LQEK]
12097
12186
+
Ser
GGA
[ENA]
¡û
>W1711000547
LQEM01000063
Gammaproteobacteria
Mannheimia haemolytica [LQEM]
12097
12186
+
Ser
GGA
[ENA]
¡û
>W1711000667
LQEP01000096
Gammaproteobacteria
Mannheimia haemolytica [LQEP]
12096
12185
+
Ser
GGA
[ENA]
¡û
>W1711000751
LQER01000081
Gammaproteobacteria
Mannheimia haemolytica [LQER]
12097
12186
+
Ser
GGA
[ENA]
¡û
>W1711000892
LQEU01000072
Gammaproteobacteria
Mannheimia haemolytica [LQEU]
12096
12185
+
Ser
GGA
[ENA]
¡û
>W1711000931
LQEV01000064
Gammaproteobacteria
Mannheimia haemolytica [LQEV]
12096
12185
+
Ser
GGA
[ENA]
¡û
>W1711001013
LQEX01000065
Gammaproteobacteria
Mannheimia haemolytica [LQEX]
12097
12186
+
Ser
GGA
[ENA]
¡û
>W1711001079
LQEZ01000046
Gammaproteobacteria
Mannheimia haemolytica [LQEZ]
12096
12185
+
Ser
GGA
[ENA]
¡û
>W1711001263
LQFD01000079
Gammaproteobacteria
Mannheimia haemolytica [LQFD]
12096
12185
+
Ser
GGA
[ENA]
¡û
>W1711001389
LQFG01000074
Gammaproteobacteria
Mannheimia haemolytica [LQFG]
12096
12185
+
Ser
GGA
[ENA]
¡û
>W1711001476
LQFI01000072
Gammaproteobacteria
Mannheimia haemolytica [LQFI]
12096
12185
+
Ser
GGA
[ENA]
¡û
>W1711001559
LQFK01000038
Gammaproteobacteria
Mannheimia haemolytica [LQFK]
12097
12186
+
Ser
GGA
[ENA]
¡û
>W1711001766
LQFP01000076
Gammaproteobacteria
Mannheimia haemolytica [LQFP]
12097
12186
+
Ser
GGA
[ENA]
¡û
>W1711001801
LQFQ01000044
Gammaproteobacteria
Mannheimia haemolytica [LQFQ]
12096
12185
+
Ser
GGA
[ENA]
¡û
>W1711001859
LQFR01000070
Gammaproteobacteria
Mannheimia haemolytica [LQFR]
12097
12186
+
Ser
GGA
[ENA]
¡û
>W1711002066
LQFW01000077
Gammaproteobacteria
Mannheimia haemolytica [LQFW]
12096
12185
+
Ser
GGA
[ENA]
¡û
>W1711002101
LQFX01000043
Gammaproteobacteria
Mannheimia haemolytica [LQFX]
12096
12185
+
Ser
GGA
[ENA]
¡û
>W1711002247
LQGA01000081
Gammaproteobacteria
Mannheimia haemolytica [LQGA]
12096
12185
+
Ser
GGA
[ENA]
¡û
>W1711002335
LQGC01000022
Gammaproteobacteria
Histophilus somni [LQGC]
43770
43859
+
Ser
GGA
[ENA]
¡û
>W1711002383
LQGD01000059
Gammaproteobacteria
Histophilus somni [LQGD]
1343
1254
-
Ser
GGA
[ENA]
¡û
>W1711002544
LQGH01000044
Gammaproteobacteria
Histophilus somni [LQGH]
2060
1971
-
Ser
GGA
[ENA]
¡û
>W1711002919
LQGQ01000066
Gammaproteobacteria
Mannheimia haemolytica [LQGQ]
12097
12186
+
Ser
GGA
[ENA]
¡û
>W1711308700
MAQE01000001
Gammaproteobacteria
Aggregatibacter aphrophilus [MAQE]
298669
298758
+
Ser
GGA
[ENA]
¡û
>W1711388485
MEHR01000004
Gammaproteobacteria
Mannheimia haemolytica [MEHR]
466004
465915
-
Ser
GGA
[ENA]
¡û
>W1711509726
MKZZ01000003
Gammaproteobacteria
Rodentibacter pneumotropicus [MKZZ]
311491
311580
+
Ser
GGA
[ENA]
¡û
>W1711510152
MLAI01000015
Gammaproteobacteria
Rodentibacter ratti [MLAI]
100168
100257
+
Ser
GGA
[ENA]
¡û
>W1711515457
MLHO01000014
Gammaproteobacteria
Rodentibacter genomosp. 2 [MLHO]
89055
89144
+
Ser
GGA
[ENA]
¡û
>W1711515616
MLHR01000017
Gammaproteobacteria
Rodentibacter pneumotropicus [MLHR]
3875
3786
-
Ser
GGA
[ENA]
¡û
>W1711515649
MLHS01000002
Gammaproteobacteria
Rodentibacter sp. Ppn85 [MLHS]
73608
73519
-
Ser
GGA
[ENA]
¡û
>W1711538516
MLYL01000042
Gammaproteobacteria
Mannheimia haemolytica [MLYL]
163776
163865
+
Ser
GGA
[ENA]
¡û
>W1711538591
MLYM01000067
Gammaproteobacteria
Mannheimia haemolytica [MLYM]
4779
4690
-
Ser
GGA
[ENA]
¡û
>W1711571564
MNAL01000011
Gammaproteobacteria
Glaesserella parasuis [MNAL]
47175
47264
+
Ser
GGA
[ENA]
¡û
>W1711571799
MNAP01000026
Gammaproteobacteria
Glaesserella parasuis [MNAP]
2395
2306
-
Ser
GGA
[ENA]
¡û
>W1711571849
MNAQ01000032
Gammaproteobacteria
Glaesserella parasuis [MNAQ]
2296
2207
-
Ser
GGA
[ENA]
¡û
>W1711571895
MNAR01000031
Gammaproteobacteria
Glaesserella parasuis [MNAR]
2296
2207
-
Ser
GGA
[ENA]
¡û
>W1711571949
MNAS01000030
Gammaproteobacteria
Glaesserella parasuis [MNAS]
24616
24705
+
Ser
GGA
[ENA]
¡û
>W1711571998
MNAT01000028
Gammaproteobacteria
Glaesserella parasuis [MNAT]
2288
2199
-
Ser
GGA
[ENA]
¡û
>W1711572038
MNAU01000025
Gammaproteobacteria
Glaesserella parasuis [MNAU]
2288
2199
-
Ser
GGA
[ENA]
¡û
>W1711572090
MNAV01000028
Gammaproteobacteria
Glaesserella parasuis [MNAV]
2294
2205
-
Ser
GGA
[ENA]
¡û
>W1711572124
MNAW01000017
Gammaproteobacteria
Glaesserella parasuis [MNAW]
8262
8173
-
Ser
GGA
[ENA]
¡û
>W1711572170
MNAX01000015
Gammaproteobacteria
Glaesserella parasuis [MNAX]
8262
8173
-
Ser
GGA
[ENA]
¡û
>W1711572226
MNAY01000016
Gammaproteobacteria
Glaesserella parasuis [MNAY]
38733
38822
+
Ser
GGA
[ENA]
¡û
>W1711572253
MNAZ01000004
Gammaproteobacteria
Glaesserella parasuis [MNAZ]
63630
63541
-
Ser
GGA
[ENA]
¡û
>W1711603322
MOLW01000139
Gammaproteobacteria
Glaesserella parasuis [MOLW]
232
143
-
Ser
GGA
[ENA]
¡û
>W1711603339
MOLW01000216
Gammaproteobacteria
Glaesserella parasuis [MOLW]
21277
21188
-
Ser
GGA
[ENA]
¡û
>W1711663811
MQVI01000011
Gammaproteobacteria
Pasteurellaceae bacterium 15-036681 [MQVI]
36042
35953
-
Ser
GGA
[ENA]
¡û
>W1711765831
MUXW01000041
Gammaproteobacteria
Glaesserella parasuis [MUXW]
8193
8104
-
Ser
GGA
[ENA]
¡û
>W1711765930
MUXY01000008
Gammaproteobacteria
Haemophilus parahaemolyticus [MUXY]
37985
37896
-
Ser
GGA
[ENA]
¡û
>W1711766150
MUYD01000003
Gammaproteobacteria
[Haemophilus] ducreyi [MUYD]
198275
198186
-
Ser
GGA
[ENA]
¡û
>C171084475
CP018808
Gammaproteobacteria
Histophilus somni USDA-ARS-USMARC-63374 [CP018808]
1810273
1810184
-
Ser
GGA
-
¡û
>C171104107
CP020085
Gammaproteobacteria
Glaesserella parasuis CL120103 [CP020085]
1992557
1992646
+
Ser
GGA
-
¡û
>W131091178
AOGP01000036
Gammaproteobacteria
Mannheimia haemolytica serotype 6 str. H23 [AOGP]
4774
4685
-
Ser
GGA
[ENA]
¡û
>W131099152
AOSU01000023
Gammaproteobacteria
Glaesserella parasuis gx033 [AOSU]
2244
2155
-
Ser
GGA
[ENA]
¡û
>W131165787
ARBW01000001
Gammaproteobacteria
Rodentibacter pneumotropicus DSM 21403 [ARBW]
223666
223755
+
Ser
GGA
[ENA]
¡û
>C001172
CP000746
Gammaproteobacteria
Actinobacillus succinogenes 130Z [CP000746]
2261328
2261239
-
Ser
GGA
[Ensembl]
¡û
>C010486
AE017143
Gammaproteobacteria
[Haemophilus] ducreyi 35000HP [AE017143]
1500626
1500537
-
Ser
GGA
[Ensembl]
¡û
>WENV180178341
OAWH01006126
[OAWH] human gut metagenome; faeces
155
66
-
Ser
GGA
[ENA]
¢þ
>W141021670
AJMH01000055
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype b str. S23A [AJMH]
15100
15011
-
Ser
GGA
[ENA]
¡û
>WENV180456927
OBXT01000063
[OBXT] human gut metagenome; faeces
15662
15573
-
Ser
GGA
[ENA]
¢þ
>W141051702
ANKT01000047
Gammaproteobacteria
Glaesserella parasuis str. Nagasaki [ANKT]
7647
7736
+
Ser
GGA
[ENA]
¡û
>W141062959
APBT01000051
Gammaproteobacteria
Glaesserella parasuis str. Nagasaki [APBT]
24775
24864
+
Ser
GGA
[ENA]
¡û
>W141062980
APBU01000025
Gammaproteobacteria
Glaesserella parasuis SW114 [APBU]
3449
3360
-
Ser
GGA
[ENA]
¡û
>W141063013
APBV01000038
Gammaproteobacteria
Glaesserella parasuis MN-H [APBV]
14045
13956
-
Ser
GGA
[ENA]
¡û
>W141063052
APBW01000034
Gammaproteobacteria
Glaesserella parasuis 12939 [APBW]
91334
91245
-
Ser
GGA
[ENA]
¡û
>W141063091
APBX01000027
Gammaproteobacteria
Glaesserella parasuis 84-15995 [APBX]
22556
22467
-
Ser
GGA
[ENA]
¡û
>W141063125
APBY01000034
Gammaproteobacteria
Glaesserella parasuis H465 [APBY]
2572
2483
-
Ser
GGA
[ENA]
¡û
>W141063184
APBZ01000030
Gammaproteobacteria
Glaesserella parasuis D74 [APBZ]
152895
152984
+
Ser
GGA
[ENA]
¡û
>W141063230
APCB01000042
Gammaproteobacteria
Glaesserella parasuis SW140 [APCB]
34257
34168
-
Ser
GGA
[ENA]
¡û
>WENV180717927
ODGE01012052
[ODGE] human metagenome; G_DNA_Buccal mucosa
750
839
+
Ser
GGA
[ENA]
¢þ
>WENV180721972
ODGL01040605
[ODGL] human metagenome; G_DNA_Subgingival plaque
21
110
+
Ser
GGA
[ENA]
¢þ
>WENV180727243
ODGU01003431
[ODGU] human metagenome; G_DNA_Supragingival plaque
90
1
-
Ser
GGA
[ENA]
¢þ
>WENV180728075
ODGU01023438
[ODGU] human metagenome; G_DNA_Supragingival plaque
1593
1682
+
Ser
GGA
[ENA]
¢þ
>WENV180735386
ODGZ01190181
[ODGZ] human metagenome; G_DNA_Supragingival plaque
115
204
+
Ser
GGA
[ENA]
¢þ
>WENV180735702
ODHB01000328
[ODHB] human metagenome; G_DNA_Supragingival plaque
6569
6658
+
Ser
GGA
[ENA]
¢þ
>WENV180739054
ODHD01003786
[ODHD] human metagenome; G_DNA_Supragingival plaque
1548
1459
-
Ser
GGA
[ENA]
¢þ
>W141082130
ATSY01000021
Gammaproteobacteria
Mannheimia haemolytica D193 [ATSY]
4970
4881
-
Ser
GGA
[ENA]
¡û
>W141082168
ATSZ01000008
Gammaproteobacteria
Mannheimia haemolytica MhBrain2012 [ATSZ]
52551
52462
-
Ser
GGA
[ENA]
¡û
>W141082236
ATTA01000015
Gammaproteobacteria
Mannheimia haemolytica MhSwine2000 [ATTA]
4938
4849
-
Ser
GGA
[ENA]
¡û
>W141082819
AUNK01000071
Gammaproteobacteria
Mannheimia haemolytica D35 [AUNK]
8214
8125
-
Ser
GGA
[ENA]
¡û
>W141082873
AUNL01000040
Gammaproteobacteria
Mannheimia haemolytica D38 [AUNL]
4958
4869
-
Ser
GGA
[ENA]
¡û
>WENV180914771
ODSZ01008613
[ODSZ] human metagenome; G_DNA_Buccal mucosa
633
722
+
Ser
GGA
[ENA]
¢þ
>WENV180924149
ODTK01001422
[ODTK] human metagenome; G_DNA_Supragingival plaque
10632
10721
+
Ser
GGA
[ENA]
¢þ
>WENV180927680
ODTM01002368
[ODTM] human metagenome; G_DNA_Supragingival plaque
2790
2879
+
Ser
GGA
[ENA]
¢þ
>WENV180927856
ODTM01005384
[ODTM] human metagenome; G_DNA_Supragingival plaque
2346
2257
-
Ser
GGA
[ENA]
¢þ
>WENV180939475
ODTX01041242
[ODTX] human metagenome; G_DNA_Supragingival plaque
957
1046
+
Ser
GGA
[ENA]
¢þ
>WENV180950222
ODUG01118368
[ODUG] human metagenome; G_DNA_Tongue dorsum
222
311
+
Ser
GGA
[ENA]
¢þ
>WENV180963987
ODUO01000066
[ODUO] human metagenome; G_DNA_Supragingival plaque
19328
19239
-
Ser
GGA
[ENA]
¢þ
>WENV180999810
ODVT01072780
[ODVT] human metagenome; G_DNA_Buccal mucosa
134
45
-
Ser
GGA
[ENA]
¢þ
>WENV181067239
ODZI01009954
[ODZI] human metagenome; G_DNA_Supragingival plaque
872
783
-
Ser
GGA
[ENA]
¢þ
>WENV181091883
OEBC01115952
[OEBC] human metagenome; G_DNA_Supragingival plaque
458
369
-
Ser
GGA
[ENA]
¢þ
>WENV181107008
OEEI01001349
[OEEI] human metagenome; G_DNA_Supragingival plaque
6575
6664
+
Ser
GGA
[ENA]
¢þ
>WENV181125460
OEFT01121786
[OEFT] human metagenome; G_DNA_Tongue dorsum
198
109
-
Ser
GGA
[ENA]
¢þ
>WENV181125782
OEFU01031429
[OEFU] human metagenome; G_DNA_Saliva
354
443
+
Ser
GGA
[ENA]
¢þ
>WENV181125846
OEFU01057475
[OEFU] human metagenome; G_DNA_Saliva
121
32
-
Ser
GGA
[ENA]
¢þ
>WENV181156477
OEIE01020149
[OEIE] human metagenome; G_DNA_Supragingival plaque
841
930
+
Ser
GGA
[ENA]
¢þ
>WENV181158193
OEIH01000007
[OEIH] human metagenome; G_DNA_Supragingival plaque
160423
160512
+
Ser
GGA
[ENA]
¢þ
>WENV181180652
OEJU01000466
[OEJU] human metagenome; G_DNA_Supragingival plaque
16539
16450
-
Ser
GGA
[ENA]
¢þ
>WENV181501780
OGGI01001648
[OGGI] metagenome; Human gut stool
11837
11748
-
Ser
GGA
[ENA]
¢þ
>WENV181566649
OGJJ01000035
[OGJJ] metagenome; Human gut stool
93267
93356
+
Ser
GGA
[ENA]
¢þ
>W08007780
ABKM01000029
Gammaproteobacteria
Glaesserella parasuis 29755 [ABKM]
2440
2354
-
Ser
GGA
[ENA]
¡û
>W141212514
AZQU01000035
Gammaproteobacteria
Glaesserella parasuis 84-17975 [AZQU]
24554
24643
+
Ser
GGA
[ENA]
¡û
>W141255226
CBTX010000128
Gammaproteobacteria
Glaesserella parasuis 29755 [CBTX]
2557
2468
-
Ser
GGA
[ENA]
¡û
>C08005522
CP000947
Gammaproteobacteria
Histophilus somni 2336 [CP000947]
240492
240581
+
Ser
GGA
[Ensembl]
¡û
>W141401029
JDSO01000051
Gammaproteobacteria
Glaesserella parasuis HPS10 [JDSO]
35574
35663
+
Ser
GGA
[ENA]
¡û
>W141401071
JDSP01000088
Gammaproteobacteria
Glaesserella parasuis HPS11 [JDSP]
2314
2225
-
Ser
GGA
[ENA]
¡û
>C181053350
CP021644
Gammaproteobacteria
Glaesserella parasuis 29755 [CP021644]
642635
642546
-
Ser
GGA
-
¡û
>C181055846
CP022037
Gammaproteobacteria
[Haemophilus] ducreyi FDAARGOS_297 [CP022037]
888816
888905
+
Ser
GGA
-
¡û
>C181075111
CP023043
Gammaproteobacteria
Mannheimia haemolytica 193 [CP023043]
849505
849594
+
Ser
GGA
-
¡û
>C181075174
CP023044
Gammaproteobacteria
Mannheimia haemolytica 191 [CP023044]
918007
918096
+
Ser
GGA
-
¡û
>C181075261
CP023046
Gammaproteobacteria
Mannheimia haemolytica 187 [CP023046]
1664553
1664464
-
Ser
GGA
-
¡û
>C181075297
CP023047
Gammaproteobacteria
Mannheimia haemolytica 186 [CP023047]
914768
914857
+
Ser
GGA
-
¡û
>C181099526
CP024412
Gammaproteobacteria
Glaesserella parasuis SH0104 [CP024412]
509628
509717
+
Ser
GGA
-
¡û
>C181176099
CP029206
Gammaproteobacteria
Actinobacillus porcitonsillarum 9953L55 [CP029206]
2259879
2259790
-
Ser
GGA
-
¡û
>C181187415
CP030062
Gammaproteobacteria
Mannheimia varigena Teagasc 1 [CP030062]
1942815
1942726
-
Ser
GGA
-
¡û
>C181204627
LS483299
Gammaproteobacteria
Mannheimia haemolytica NCTC10609 [LS483299]
2128976
2128887
-
Ser
GGA
-
¡û
>C191024004
CP023057
Gammaproteobacteria
Glaesserella sp. 15-184 [CP023057]
283560
283649
+
Ser
GGA
-
¡û
>W09103647
AAKC01000040
Gammaproteobacteria
Actinobacillus succinogenes 130Z [AAKC]
7675
7764
+
Ser
GGA
[ENA]
¡û
>C191208992
LR134364
Gammaproteobacteria
[Haemophilus] ducreyi NCTC11483 [LR134364]
876285
876374
+
Ser
GGA
-
¡û
>C191212609
LR134495
Gammaproteobacteria
Mannheimia haemolytica NCTC10643 [LR134495]
1096313
1096402
+
Ser
GGA
-
¡û
>W09121976
ACFT01000034
Gammaproteobacteria
Actinobacillus minor 202 [ACFT]
20687
20776
+
Ser
GGA
[ENA]
¡û
>W09133765
ACQL01000055
Gammaproteobacteria
Actinobacillus minor NM305 [ACQL]
94380
94291
-
Ser
GGA
[ENA]
¡û
>W141555763
JHQI01000146
Gammaproteobacteria
Glaesserella parasuis [JHQI]
11014
11103
+
Ser
GGA
[ENA]
¡û
>W141621386
JJNQ01000038
Gammaproteobacteria
Glaesserella parasuis ST4-1 [JJNQ]
2293
2204
-
Ser
GGA
[ENA]
¡û
>W141621430
JJNR01000031
Gammaproteobacteria
Glaesserella parasuis ST4-2 [JJNR]
2431
2342
-
Ser
GGA
[ENA]
¡û
>C141005829
CP006619
Gammaproteobacteria
Mannheimia haemolytica USMARC_2286 [CP006619]
1799091
1799002
-
Ser
GGA
[Ensembl]
¡û
>C09100057
CP001607
Gammaproteobacteria
Aggregatibacter aphrophilus NJ8700 [CP001607]
20245
20156
-
Ser
GGA
[Ensembl]
¡û
>C09106676
CP001321
Gammaproteobacteria
Glaesserella parasuis SH0165 [CP001321]
913047
912958
-
Ser
GGA
[Ensembl]
¡û
>W1910913648
NHRD01000001
Gammaproteobacteria
Actinobacillus succinogenes GXAS137 [NHRD]
1187786
1187875
+
Ser
GGA
[ENA]
¡û
>W1911199040
NRCY01000002
Gammaproteobacteria
Aggregatibacter aphrophilus PN_521 [NRCY]
228641
228730
+
Ser
GGA
[ENA]
¡û
>W1911199237
NRDC01000002
Gammaproteobacteria
Aggregatibacter aphrophilus CCUG 11575 [NRDC]
220217
220128
-
Ser
GGA
[ENA]
¡û
>W1911775598
QXNH01000008
Gammaproteobacteria
Rodentibacter pneumotropicus 607_10 [QXNH]
59551
59640
+
Ser
GGA
[ENA]
¡û
>W1810304678
PTPX01000014
Gammaproteobacteria
Glaesserella australis HS4635 [PTPX]
165321
165410
+
Ser
GGA
[ENA]
¡û
>W1810576852
QENU01000002
Gammaproteobacteria
Pasteurella langaaensis DSM 22999 [QENU]
165404
165493
+
Ser
GGA
[ENA]
¡û
>W1810578579
QEPU01000002
Gammaproteobacteria
Aggregatibacter aphrophilus C2008000870 [QEPU]
233138
233227
+
Ser
GGA
[ENA]
¡û
>C151015039
CP006943
Gammaproteobacteria
Mannheimia varigena USDA-ARS-USMARC-1296 [CP006943]
1565031
1564942
-
Ser
GGA
[Ensembl]
¡û
>C151015100
CP006944
Gammaproteobacteria
Mannheimia varigena USDA-ARS-USMARC-1312 [CP006944]
1478030
1477941
-
Ser
GGA
[Ensembl]
¡û
>C151015265
CP006953
Gammaproteobacteria
Mannheimia varigena USDA-ARS-USMARC-1388 [CP006953]
666077
666166
+
Ser
GGA
[Ensembl]
¡û
>C151015528
CP006957
Gammaproteobacteria
Mannheimia haemolytica USDA-ARS-USMARC-184 [CP006957]
1724603
1724514
-
Ser
GGA
[Ensembl]
¡û
>C151044952
CP009158
Gammaproteobacteria
Glaesserella parasuis SH03 [CP009158]
240929
240840
-
Ser
GGA
[Ensembl]
¡û
>C151046119
CP009230
Gammaproteobacteria
Aggregatibacter aphrophilus NJ8700 [CP009230]
20244
20155
-
Ser
GGA
-
¡û
>C151046265
CP009237
Gammaproteobacteria
Glaesserella parasuis KL0318 [CP009237]
2043838
2043749
-
Ser
GGA
[Ensembl]
¡û
>C151076550
CP011098
Gammaproteobacteria
Mannheimia haemolytica 89010807N [CP011098]
920125
920214
+
Ser
GGA
[Ensembl]
¡û
>C151076613
CP011099
Gammaproteobacteria
Mannheimia haemolytica 89010807N lktA- [CP011099]
920143
920232
+
Ser
GGA
[Ensembl]
¡û
>W10108024
ACZX01000017
Gammaproteobacteria
Mannheimia haemolytica serotype A2 str. OVINE [ACZX]
12020
12109
+
Ser
GGA
[ENA]
¡û
>W10108104
ACZY01000068
Gammaproteobacteria
Mannheimia haemolytica serotype A2 str. BOVINE [ACZY]
11902
11991
+
Ser
GGA
[ENA]
¡û
>W1510019888
BBXJ01000001
Gammaproteobacteria
Rodentibacter heylii ATCC 12555 [BBXJ]
1954637
1954726
+
Ser
GGA
[ENA]
¡û
>W10110691
ADCF01000001
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans D7S-1 [ADCF]
1755788
1755877
+
Ser
GGA
[ENA]
¡û
>W11109798
ACZJ01000009
Gammaproteobacteria
Aggregatibacter aphrophilus F0387 [ACZJ]
70789
70878
+
Ser
GGA
[ENA]
¡û
>W11110411
ACZX01000017
Gammaproteobacteria
Mannheimia haemolytica serotype A2 str. OVINE [ACZX]
12020
12109
+
Ser
GGA
[ENA]
¡û
>W11110491
ACZY01000068
Gammaproteobacteria
Mannheimia haemolytica serotype A2 str. BOVINE [ACZY]
11902
11991
+
Ser
GGA
[ENA]
¡û
>W11113128
ADCF01000001
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans D7S-1 [ADCF]
1755788
1755877
+
Ser
GGA
[ENA]
¡û
>W1511302948
JPIZ01000033
Gammaproteobacteria
Mannheimia haemolytica MH10517 [JPIZ]
5050
4961
-
Ser
GGA
[ENA]
¡û
>W1511319555
JPZI01000002
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans RhAA1 RHAA1 [JPZI]
72402
72491
+
Ser
GGA
[ENA]
¡û
>W11121425
ADOB01000046
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans D17P-2 [ADOB]
62281
62370
+
Ser
GGA
[ENA]
¡û
>W1511480350
JWIZ01000061
Gammaproteobacteria
Muribacter muris Ackerman80-443D [JWIZ]
2353
2264
-
Ser
GGA
[ENA]
¡û
>W11138954
AEJM01000019
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. SC1083 [AEJM]
21399
21488
+
Ser
GGA
[ENA]
¡û
>W11139004
AEJN01000092
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. SCC393 [AEJN]
18961
18872
-
Ser
GGA
[ENA]
¡û
>W11139034
AEJO01000002
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype f str. D18P1 [AEJO]
18981
18892
-
Ser
GGA
[ENA]
¡û
>W11139161
AEJR01000004
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype c str. SCC2302 [AEJR]
18984
18895
-
Ser
GGA
[ENA]
¡û
>W11150761
AEWB01000009
Gammaproteobacteria
Aggregatibacter aphrophilus ATCC 33389 [AEWB]
45721
45810
+
Ser
GGA
[ENA]
¡û
>C121013599
CP003496
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans D7S-1 [CP003496]
1755788
1755877
+
Ser
GGA
[Ensembl]
¡û
>C161032184
CP011218
Gammaproteobacteria
[Haemophilus] ducreyi NZS1 [CP011218]
1418176
1418087
-
Ser
GGA
-
¡û
>C161032236
CP011219
Gammaproteobacteria
[Haemophilus] ducreyi NZS2 [CP011219]
1446984
1446895
-
Ser
GGA
-
¡û
>C161032288
CP011220
Gammaproteobacteria
[Haemophilus] ducreyi NZS3 [CP011220]
1439321
1439232
-
Ser
GGA
-
¡û
>C161032339
CP011221
Gammaproteobacteria
[Haemophilus] ducreyi NZS4 [CP011221]
1426370
1426281
-
Ser
GGA
-
¡û
>C161032391
CP011222
Gammaproteobacteria
[Haemophilus] ducreyi 82-029362 [CP011222]
1456252
1456163
-
Ser
GGA
-
¡û
>C161032437
CP011223
Gammaproteobacteria
[Haemophilus] ducreyi 6644 [CP011223]
1476953
1476864
-
Ser
GGA
-
¡û
>C161032490
CP011224
Gammaproteobacteria
[Haemophilus] ducreyi HD183 [CP011224]
1454220
1454131
-
Ser
GGA
-
¡û
>C161032589
CP011226
Gammaproteobacteria
[Haemophilus] ducreyi HMC56 [CP011226]
1405584
1405495
-
Ser
GGA
-
¡û
>C161032639
CP011227
Gammaproteobacteria
[Haemophilus] ducreyi NZV1 [CP011227]
1374514
1374425
-
Ser
GGA
-
¡û
>C161032688
CP011228
Gammaproteobacteria
[Haemophilus] ducreyi 33921 [CP011228]
1398931
1398842
-
Ser
GGA
-
¡û
>C161032740
CP011229
Gammaproteobacteria
[Haemophilus] ducreyi CIP 54.2 [CP011229]
1345231
1345142
-
Ser
GGA
-
¡û
>C161032792
CP011230
Gammaproteobacteria
[Haemophilus] ducreyi DMC64 [CP011230]
1369081
1368992
-
Ser
GGA
-
¡û
>C161032843
CP011231
Gammaproteobacteria
[Haemophilus] ducreyi DMC111 [CP011231]
1344725
1344636
-
Ser
GGA
-
¡û
>C161083090
CP015099
Gammaproteobacteria
Glaesserella parasuis SC1401 [CP015099]
1807720
1807631
-
Ser
GGA
[Ensembl]
¡û
>C161087808
CP015424
Gammaproteobacteria
[Haemophilus] ducreyi VAN1 [CP015424]
214345
214434
+
Ser
GGA
-
¡û
>C161087871
CP015425
Gammaproteobacteria
[Haemophilus] ducreyi VAN2 [CP015425]
1239575
1239664
+
Ser
GGA
-
¡û
>C161087916
CP015426
Gammaproteobacteria
[Haemophilus] ducreyi VAN3 [CP015426]
718549
718638
+
Ser
GGA
-
¡û
>C161087982
CP015427
Gammaproteobacteria
[Haemophilus] ducreyi VAN4 [CP015427]
1180579
1180490
-
Ser
GGA
-
¡û
>C161088044
CP015428
Gammaproteobacteria
[Haemophilus] ducreyi VAN5 [CP015428]
476567
476478
-
Ser
GGA
-
¡û
>C161088053
CP015429
Gammaproteobacteria
[Haemophilus] ducreyi GHA1 [CP015429]
216271
216360
+
Ser
GGA
-
¡û
>C161088141
CP015430
Gammaproteobacteria
[Haemophilus] ducreyi GHA2 [CP015430]
519832
519743
-
Ser
GGA
-
¡û
>C161088156
CP015431
Gammaproteobacteria
[Haemophilus] ducreyi GHA3 [CP015431]
551582
551671
+
Ser
GGA
-
¡û
>C161088224
CP015432
Gammaproteobacteria
[Haemophilus] ducreyi GHA5 [CP015432]
1283451
1283362
-
Ser
GGA
-
¡û
>C161088260
CP015433
Gammaproteobacteria
[Haemophilus] ducreyi GHA8 [CP015433]
733500
733589
+
Ser
GGA
-
¡û
>C161088322
CP015434
Gammaproteobacteria
[Haemophilus] ducreyi GHA9 [CP015434]
1212034
1211945
-
Ser
GGA
-
¡û
>C161098885
CP016553
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans IDH781 [CP016553]
76899
76810
-
Ser
GGA
-
¡û
>W121065012
AJMU01000078
Gammaproteobacteria
Haemophilus paraphrohaemolyticus HK411 [AJMU]
23381
23292
-
Ser
GGA
[ENA]
¡û
>W121066935
AJSW01000061
Gammaproteobacteria
Haemophilus parahaemolyticus HK385 [AJSW]
60304
60393
+
Ser
GGA
[ENA]
¡û
>W1610040312
AZTW01000045
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. SA3033 [AZTW]
47799
47888
+
Ser
GGA
[ENA]
¡û
>W1610040350
AZTX01000141
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. SA269 [AZTX]
1960
2049
+
Ser
GGA
[ENA]
¡û
>W1610040397
AZTY01000169
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. SA2200 [AZTY]
1082
1171
+
Ser
GGA
[ENA]
¡û
>C131014022
CP004752
Gammaproteobacteria
Mannheimia haemolytica USDA-ARS-USMARC-183 [CP004752]
920243
920332
+
Ser
GGA
[Ensembl]
¡û
>C131014116
CP004753
Gammaproteobacteria
Mannheimia haemolytica USDA-ARS-USMARC-185 [CP004753]
1659349
1659260
-
Ser
GGA
[Ensembl]
¡û
>C131015136
CP005383
Gammaproteobacteria
Mannheimia haemolytica M42548 [CP005383]
2379352
2379263
-
Ser
GGA
[Ensembl]
¡û
>C131015218
CP005384
Gammaproteobacteria
Glaesserella parasuis ZJ0906 [CP005384]
358921
358832
-
Ser
GGA
[Ensembl]
¡û
>C131016548
CP005972
Gammaproteobacteria
Mannheimia haemolytica D153 [CP005972]
657008
656919
-
Ser
GGA
[Ensembl]
¡û
>C131017619
CP006573
Gammaproteobacteria
Mannheimia haemolytica D171 [CP006573]
570764
570675
-
Ser
GGA
[Ensembl]
¡û
>C131017681
CP006574
Gammaproteobacteria
Mannheimia haemolytica D174 [CP006574]
697137
697048
-
Ser
GGA
[Ensembl]
¡û
>W1610609536
LFXV01000044
Gammaproteobacteria
Mannheimia haemolytica [LFXV]
4713
4624
-
Ser
GGA
[ENA]
¡û
>W1610609581
LFXW01000055
Gammaproteobacteria
Mannheimia haemolytica [LFXW]
4906
4817
-
Ser
GGA
[ENA]
¡û
>W1610609627
LFXX01000052
Gammaproteobacteria
Mannheimia haemolytica [LFXX]
4730
4641
-
Ser
GGA
[ENA]
¡û
>W1610609668
LFXY01000052
Gammaproteobacteria
Mannheimia haemolytica [LFXY]
10791
10880
+
Ser
GGA
[ENA]
¡û
>W1610609714
LFXZ01000052
Gammaproteobacteria
Mannheimia haemolytica [LFXZ]
11387
11476
+
Ser
GGA
[ENA]
¡û
>W1610609757
LFYA01000055
Gammaproteobacteria
Mannheimia haemolytica [LFYA]
4715
4626
-
Ser
GGA
[ENA]
¡û
>W1610609792
LFYB01000045
Gammaproteobacteria
Mannheimia haemolytica [LFYB]
4713
4624
-
Ser
GGA
[ENA]
¡û
>W1610609845
LFYC01000046
Gammaproteobacteria
Mannheimia haemolytica [LFYC]
4906
4817
-
Ser
GGA
[ENA]
¡û
>W1610609898
LFYD01000050
Gammaproteobacteria
Mannheimia haemolytica [LFYD]
8149
8238
+
Ser
GGA
[ENA]
¡û
>W1610609943
LFYE01000055
Gammaproteobacteria
Mannheimia haemolytica [LFYE]
7114
7203
+
Ser
GGA
[ENA]
¡û
>W1610749145
LMZZ01000013
Gammaproteobacteria
[Haemophilus] ducreyi [LMZZ]
35404
35493
+
Ser
GGA
[ENA]
¡û
>W1611056357
MAQE01000001
Gammaproteobacteria
Aggregatibacter aphrophilus [MAQE]
298669
298758
+
Ser
GGA
[ENA]
¡û
>W1710037457
AZTW01000045
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. SA3033 [AZTW]
47799
47888
+
Ser
GGA
[ENA]
¡û
>W1710037495
AZTX01000141
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. SA269 [AZTX]
1960
2049
+
Ser
GGA
[ENA]
¡û
>W1710037542
AZTY01000169
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. SA2200 [AZTY]
1082
1171
+
Ser
GGA
[ENA]
¡û
>W1710555106
FOJC01000002
Gammaproteobacteria
[Haemophilus] ducreyi [FOJC]
35707
35796
+
Ser
GGA
[ENA]
¡û
>W1710730823
LFXV01000044
Gammaproteobacteria
Mannheimia haemolytica [LFXV]
4713
4624
-
Ser
GGA
[ENA]
¡û
>W1710730868
LFXW01000055
Gammaproteobacteria
Mannheimia haemolytica [LFXW]
4906
4817
-
Ser
GGA
[ENA]
¡û
>W1710730914
LFXX01000052
Gammaproteobacteria
Mannheimia haemolytica [LFXX]
4730
4641
-
Ser
GGA
[ENA]
¡û
>W1710730955
LFXY01000052
Gammaproteobacteria
Mannheimia haemolytica [LFXY]
10791
10880
+
Ser
GGA
[ENA]
¡û
>W1710731001
LFXZ01000052
Gammaproteobacteria
Mannheimia haemolytica [LFXZ]
11387
11476
+
Ser
GGA
[ENA]
¡û
>W1710731044
LFYA01000055
Gammaproteobacteria
Mannheimia haemolytica [LFYA]
4715
4626
-
Ser
GGA
[ENA]
¡û
>W1710731079
LFYB01000045
Gammaproteobacteria
Mannheimia haemolytica [LFYB]
4713
4624
-
Ser
GGA
[ENA]
¡û
>W1710731132
LFYC01000046
Gammaproteobacteria
Mannheimia haemolytica [LFYC]
4906
4817
-
Ser
GGA
[ENA]
¡û
>W1710731185
LFYD01000050
Gammaproteobacteria
Mannheimia haemolytica [LFYD]
8149
8238
+
Ser
GGA
[ENA]
¡û
>W1710731230
LFYE01000055
Gammaproteobacteria
Mannheimia haemolytica [LFYE]
7114
7203
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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