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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23436 (9 seq.)
>W1711135541
LUZC01000035
Bacteroidota
Bacteroidales bacterium Bact_11 [LUZC]
8571
8661
+
Ser
GCT
[ENA]
¡û
>W1711135584
LUZE01000077
Bacteroidota
Bacteroidales bacterium Bact_13 [LUZE]
11438
11528
+
Ser
GCT
[ENA]
¡û
>WENV180683661
OCVV012844643
[OCVV] gut metagenome; gut
4203
4291
+
Ser
GCT
[ENA]
¡û
>WENV180683663
OCVV012844643
[OCVV] gut metagenome; gut
4203
4291
+
Ser
GCT
[ENA]
¡û
>WENV170776239
LXOW01146039
[LXOW] bovine gut metagenome; Cow rumen
262
172
-
Ser
GCT
[ENA]
¡û
>WENV170776740
LXOW01205163
[LXOW] bovine gut metagenome; Cow rumen
1704
1614
-
Ser
GCT
[ENA]
¡û
>WENV170778100
LXOW01358371
[LXOW] bovine gut metagenome; Cow rumen
4700
4610
-
Ser
GCT
[ENA]
¡û
>W1610946661
LUZC01000035
Bacteroidota
Bacteroidales bacterium Bact_11 [LUZC]
8571
8661
+
Ser
GCT
[ENA]
¡û
>W1610946704
LUZE01000077
Bacteroidota
Bacteroidales bacterium Bact_13 [LUZE]
11438
11528
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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