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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23438 (31 seq.)
>WENV180000690
FLNV01001037
[FLNV] bioreactor metagenome; Moose rumen
51050
51138
+
Ser
GGA
[ENA]
¡û
>WENV180000800
FLNV01002071
[FLNV] bioreactor metagenome; Moose rumen
31150
31062
-
Ser
GGA
[ENA]
¡û
>WENV180000843
FLNV01002302
[FLNV] bioreactor metagenome; Moose rumen
7711
7799
+
Ser
GGA
[ENA]
¡û
>WENV180000934
FLNW01000612
[FLNW] bioreactor metagenome; Moose rumen
168
80
-
Ser
GGA
[ENA]
¡û
>WENV180001261
FLNX01000976
[FLNX] bioreactor metagenome; Moose rumen
1320
1232
-
Ser
GGA
[ENA]
¡û
>WENV180657331
OCVV010652951
[OCVV] gut metagenome; gut
522
610
+
Ser
GGA
[ENA]
¡û
>WENV180657332
OCVV010652951
[OCVV] gut metagenome; gut
522
610
+
Ser
GGA
[ENA]
¡û
>WENV180670709
OCVV011305171
[OCVV] gut metagenome; gut
5651
5738
+
Ser
GGA
[ENA]
¡û
>WENV180670710
OCVV011305171
[OCVV] gut metagenome; gut
5651
5738
+
Ser
GGA
[ENA]
¡û
>WENV180670713
OCVV011305173
[OCVV] gut metagenome; gut
298
386
+
Ser
GGA
[ENA]
¡û
>WENV180670714
OCVV011305173
[OCVV] gut metagenome; gut
298
386
+
Ser
GGA
[ENA]
¡û
>WENV180675925
OCVV011360759
[OCVV] gut metagenome; gut
136186
136274
+
Ser
GGA
[ENA]
¡û
>WENV180675926
OCVV011360759
[OCVV] gut metagenome; gut
136186
136274
+
Ser
GGA
[ENA]
¡û
>WENV180686727
OCVV012893004
[OCVV] gut metagenome; gut
89
1
-
Ser
GGA
[ENA]
¡û
>WENV180686728
OCVV012893004
[OCVV] gut metagenome; gut
89
1
-
Ser
GGA
[ENA]
¡û
>WENV180746778
ODHN01000400
[ODHN] human metagenome; G_DNA_Stool
30614
30702
+
Ser
GGA
[ENA]
¡û
>WENV180870185
ODLN01000833
[ODLN] human metagenome; G_DNA_Stool
134
46
-
Ser
GGA
[ENA]
¡û
>WENV182867661
OKRS01000080
[OKRS] human gut metagenome; faeces
50715
50803
+
Ser
GGA
[ENA]
¡û
>WENV170776675
LXOW01195675
[LXOW] bovine gut metagenome; Cow rumen
1565
1477
-
Ser
GGA
[ENA]
¡û
>WENV170776955
LXOW01229890
[LXOW] bovine gut metagenome; Cow rumen
1834
1922
+
Ser
GGA
[ENA]
¡û
>WENV170777009
LXOW01235345
[LXOW] bovine gut metagenome; Cow rumen
5152
5242
+
Ser
GGA
[ENA]
¡û
>WENV170777175
LXOW01254230
[LXOW] bovine gut metagenome; Cow rumen
5434
5346
-
Ser
GGA
[ENA]
¡û
>WENV170777397
LXOW01278251
[LXOW] bovine gut metagenome; Cow rumen
2531
2443
-
Ser
GGA
[ENA]
¡û
>W141817411
JQKR01000008
Bacteroidota
Prevotella sp. FD3004 [JQKR]
53489
53401
-
Ser
GGA
[ENA]
¡û
>W2010432142
FZQZ01000003
Bacteroidota
Prevotellaceae bacterium MN60 [FZQZ]
128136
128224
+
Ser
GGA
[ENA]
¡û
>C231305944
CP091786
Bacteroidota
Prevotella sp. E9-3 [CP091786]
731893
731981
+
Ser
GGA
-
¡û
>C231306034
CP091787
Bacteroidota
Prevotella sp. E13-17 [CP091787]
742097
742009
-
Ser
GGA
-
¡û
>C231306096
CP091790
Bacteroidota
Prevotella sp. E13-3 [CP091790]
725106
725194
+
Ser
GGA
-
¡û
>C231306196
CP091792
Bacteroidota
Prevotella sp. E1-9 [CP091792]
643441
643529
+
Ser
GGA
-
¡û
>C231306248
CP091793
Bacteroidota
Prevotella sp. E1-a [CP091793]
643450
643538
+
Ser
GGA
-
¡û
>W1710533496
FNRE01000001
Bacteroidota
Prevotella sp. tc2-28 [FNRE]
149617
149705
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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