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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23501 (40 seq.)
>W1711340787
MCBY01000003
Gammaproteobacteria
Candidatus Marithrix sp. Canyon 246 [MCBY]
22071
21981
-
Ser
GCT
[ENA]
¡û
>W1711340838
MCBZ01000012
Gammaproteobacteria
Candidatus Marithrix sp. Canyon 246 [MCBZ]
27644
27554
-
Ser
GCT
[ENA]
¡û
>W1711340880
MCCA01000150
Gammaproteobacteria
Candidatus Marithrix sp. Canyon 246 [MCCA]
2088
1998
-
Ser
GCT
[ENA]
¡û
>W141055213
AONC01000013
Gammaproteobacteria
Imhoffiella purpurea AK35 [AONC]
73306
73396
+
Ser
GCT
[ENA]
¡û
>WENV181169735
OEIV010008797
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1053
1143
+
Ser
GCT
[ENA]
¡û
>WENV181321348
OFKL01013363
[OFKL] marine metagenome; seawater
239
329
+
Ser
GCT
[ENA]
¡û
>WENV182550381
OJCA01000852
[OJCA] seawater metagenome; Sea water
2167
2077
-
Ser
GCT
[ENA]
¡û
>WENV182560835
OJDV01000033
[OJDV] seawater metagenome; Sea water
20089
19999
-
Ser
GCT
[ENA]
¡û
>WENV182571542
OJFK01000530
[OJFK] seawater metagenome; Sea water
8410
8500
+
Ser
GCT
[ENA]
¡û
>WENV183058497
OLHR01000337
[OLHR] seawater metagenome; Sea water
13663
13753
+
Ser
GCT
[ENA]
¡û
>WENV183062223
OLID01000702
[OLID] seawater metagenome; Sea water
7251
7341
+
Ser
GCT
[ENA]
¡û
>WENV183622324
OOFV01025436
[OOFV] marine metagenome; seawater
366
456
+
Ser
GCT
[ENA]
¡û
>WENV183625455
OOGF01033405
[OOGF] marine metagenome; seawater
360
450
+
Ser
GCT
[ENA]
¡û
>WENV183630601
OOGS01058138
[OOGS] marine metagenome; seawater
116
26
-
Ser
GCT
[ENA]
¡û
>WENV170260262
CEQZ01005115
[CEQZ] marine metagenome genome assembly TARA_070_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
142
232
+
Ser
GCT
[ENA]
¡û
>WENV170521147
CEWF01097381
[CEWF] marine metagenome genome assembly TARA_122_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
444
534
+
Ser
GCT
[ENA]
¡û
>WENV170537116
CEWQ01006036
[CEWQ] marine metagenome genome assembly TARA_085_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
138
228
+
Ser
GCT
[ENA]
¡û
>WENV170550794
CXWF01028217
[CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
349
439
+
Ser
GCT
[ENA]
¡û
>WENV170568003
FLMP01012851
[FLMP] seawater metagenome; seawater
2116
2206
+
Ser
GCT
[ENA]
¡û
>WENV170950916
MEHZ011526956
[MEHZ] marine metagenome; marine surface water
2444
2534
+
Ser
GCT
[ENA]
¡û
>WENV170974863
MTKY01078280
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
564
654
+
Ser
GCT
[ENA]
¡û
>C181067764
CP022530
Gammaproteobacteria
Bacterioplanes sanyensis NV9 [CP022530]
1871682
1871772
+
Ser
GCT
-
¡û
>W2011389277
RBXL01000001
Gammaproteobacteria
Thiocapsa rosea DSM 235 [RBXL]
4430040
4430130
+
Ser
GCT
[ENA]
¡û
>W2011670487
SPIB01000002
Gammaproteobacteria
Gammaproteobacteria bacterium LSUCC0112 [SPIB]
487794
487704
-
Ser
GCT
[ENA]
¡û
>W2012398816
WNKT01000028
Gammaproteobacteria
Allochromatium palmeri DSM 15591 [WNKT]
47300
47390
+
Ser
GCT
[ENA]
¡û
>W2110049883
BMYY01000018
Gammaproteobacteria
Bacterioplanes sanyensis KCTC 32220 [BMYY]
4033
3943
-
Ser
GCT
[ENA]
¡û
>W2110663567
JAHXZR010000011
Gammaproteobacteria
Oceanobacter sp. SM2-42 [JAHXZR]
155664
155574
-
Ser
GCT
[ENA]
¡û
>C211021991
AP024563
Gammaproteobacteria
Allochromatium tepidum NZ [AP024563]
1892379
1892289
-
Ser
GCT
-
¡û
>C211065905
CP046055
Gammaproteobacteria
Oceanospirillaceae bacterium ASO5 [CP046055]
2395722
2395632
-
Ser
GCT
-
¡û
>C211065959
CP046056
Gammaproteobacteria
Oceanospirillaceae bacterium xL5 [CP046056]
2324996
2324906
-
Ser
GCT
-
¡û
>C211324780
CP073760
Gammaproteobacteria
Thiocapsa sp. [CP073760]
903819
903909
+
Ser
GCT
-
¡û
>W2110753165
NRRF01000001
Gammaproteobacteria
Thiocystis violacea DSM 208 [NRRF]
162170
162080
-
Ser
GCT
[ENA]
¡û
>W2110753616
NRRR01000003
Gammaproteobacteria
Chromatium weissei DSM 5161 [NRRR]
237917
237827
-
Ser
GCT
[ENA]
¡û
>W2110754137
NRSD01000003
Gammaproteobacteria
Thiocapsa imhoffii DSM 21303 [NRSD]
92823
92733
-
Ser
GCT
[ENA]
¡û
>W2110754461
NRSL01000040
Gammaproteobacteria
Allochromatium vinosum MT 86 [NRSL]
29560
29470
-
Ser
GCT
[ENA]
¡û
>C241048120
CP039268
Gammaproteobacteria
Thermochromatium tepidum ATCC 43061 [CP039268]
1370005
1369915
-
Ser
GCT
-
¡û
>W2130036009
JAHHPL010000341
Gammaproteobacteria
Thiocapsa sp. LSW [JAHHPL]
12031
11941
-
Ser
GCT
[ENA]
¡û
>W11176068
AFWT01000017
Gammaproteobacteria
Thiorhodococcus drewsii AZ1 [AFWT]
105979
105889
-
Ser
GCT
[ENA]
¡û
>W1710529473
FNNZ01000017
Gammaproteobacteria
Thiocapsa roseopersicina [FNNZ]
93726
93816
+
Ser
GCT
[ENA]
¡û
>W1710530592
FNOW01000009
Gammaproteobacteria
Allochromatium warmingii [FNOW]
67859
67949
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK