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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235013 (25 seq.)
>WENV180637214
OCRG01002995
[OCRG] marine metagenome; seawater
951
875
-
fMet
CAT
[ENA]
¢þ
>WENV180703945
ODEI01008681
[ODEI] human metagenome; G_DNA_Stool
1263
1187
-
fMet
CAT
[ENA]
¢þ
>WENV180993590
ODVQ01004607
[ODVQ] human metagenome; G_DNA_Stool
4121
4045
-
fMet
CAT
[ENA]
¢þ
>WENV181223593
OFDC01042576
[OFDC] hot springs metagenome; Water
752
677
-
fMet
CAT
[ENA]
¢þ
>WENV181480055
OGFG01020214
[OGFG] metagenome; Human gut stool
329
253
-
fMet
CAT
[ENA]
¢þ
>WENV181830661
OGUO01008188
[OGUO] human gut metagenome; faeces
715
791
+
fMet
CAT
[ENA]
¢þ
>WENV181832249
OGUP01014316
[OGUP] human gut metagenome; faeces
608
532
-
fMet
CAT
[ENA]
¢þ
>WENV182199293
OHPJ01024387
[OHPJ] human gut metagenome; feces
201
125
-
fMet
CAT
[ENA]
¢þ
>WENV182450449
OILW01002624
[OILW] human gut metagenome; human gut
1007
1083
+
fMet
CAT
[ENA]
¢þ
>WENV182526161
OIWT01008607
[OIWT] human gut metagenome; faeces
87
11
-
fMet
CAT
[ENA]
¢þ
>WENV183044309
OLGE01000738
[OLGE] human gut metagenome; faeces
24069
23993
-
fMet
CAT
[ENA]
¢þ
>WENV183307454
OLTH01001002
[OLTH] human gut metagenome; faeces
458
385
-
fMet
CAT
[ENA]
¢þ
>WENV183641386
OQVL01036142
[OQVL] human gut metagenome; human gut
1318
1242
-
fMet
CAT
[ENA]
¢þ
>WENV183650755
OQVT01038540
[OQVT] human gut metagenome; human gut
82
7
-
fMet
CAT
[ENA]
¢þ
>WENV183693194
ORMF012040504
[ORMF] groundwater metagenome; groundwater
67461
67385
-
fMet
CAT
[ENA]
¢þ
>WENV170551704
CXWJ01018356
[CXWJ] wastewater metagenome; activated sludge
235
311
+
Met
CAT
[ENA]
¢þ
>C181049081
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
1120522
1120598
+
Met
CAT
-
¡û
>C181049946
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
1099533
1099609
+
Met
CAT
-
¡û
>C181050020
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
1086830
1086906
+
Met
CAT
-
¡û
>C191208069
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
1101391
1101467
+
Met
CAT
-
¡û
>W141560366
JHXN01000009
Betaproteobacteria
Taylorella asinigenitalis ATCC 700933 [JHXN]
67107
67031
-
Met
CAT
[ENA]
¡û
>W1810701964
QMFX01000002
Betaproteobacteria
Taylorella equigenitalis 210217RC10635 [QMFX]
350455
350379
-
Met
CAT
[ENA]
¡û
>C11122603
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
52863
52939
+
Met
CAT
[Ensembl]
¡û
>C121004840
CP003059
Betaproteobacteria
Taylorella asinigenitalis MCE3 [CP003059]
1106432
1106508
+
Met
CAT
[Ensembl]
¡û
>C121009932
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
1132001
1132077
+
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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