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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235129 (13 seq.)
>WENV180338622
OBLI01000692
[OBLI] pig gut metagenome; faeces
35086
35012
-
Ile
GAT
[ENA]
¡û
>WENV180340753
OBLI01042828
[OBLI] pig gut metagenome; faeces
1228
1153
-
Ile
GAT
[ENA]
¡û
>WENV180534535
OCHM01015408
[OCHM] human gut metagenome; human gut
278
353
+
Ile
GAT
[ENA]
¡û
>WENV180537132
OCHN01131880
[OCHN] human gut metagenome; human gut
109
184
+
Ile
GAT
[ENA]
¡û
>WENV180678291
OCVV011935062
[OCVV] gut metagenome; gut
73
-1
-
Ile
GAT
[ENA]
¡û
>WENV180678292
OCVV011935062
[OCVV] gut metagenome; gut
73
-1
-
Ile
GAT
[ENA]
¡û
>WENV180681343
OCVV012760661
[OCVV] gut metagenome; gut
73
-1
-
Ile
GAT
[ENA]
¡û
>WENV180681344
OCVV012760661
[OCVV] gut metagenome; gut
73
-1
-
Ile
GAT
[ENA]
¡û
>WENV180684207
OCVV012854857
[OCVV] gut metagenome; gut
350
276
-
Ile
GAT
[ENA]
¡û
>WENV180684209
OCVV012854857
[OCVV] gut metagenome; gut
350
276
-
Ile
GAT
[ENA]
¡û
>WENV183556775
OOBO01009697
[OOBO] human gut metagenome; human gut
2251
2176
-
Ile
GAT
[ENA]
¡û
>ENV09002514
ADGC01004038
Wallaby gut metagenome MeugComb_C1
1260
1334
+
Ile
GAT
[ENA]
¡û
>ENV09002704
ADGC01015551
Wallaby gut metagenome MeugComb_C1
292
366
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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