This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235137 (48 seq.)
>WENV180220742
OBAW01003689
[OBAW] human gut metagenome; human gut
650
726
+
Arg
TCT
[ENA]
¡û
>WENV180222160
OBBC01015093
[OBBC] human gut metagenome; human gut
93
17
-
Arg
TCT
[ENA]
¡û
>WENV180246839
OBDQ01010546
[OBDQ] human gut metagenome; human gut
361
285
-
Arg
TCT
[ENA]
¡û
>WENV180539747
OCHP01097820
[OCHP] human gut metagenome; human gut
2
78
+
Arg
TCT
[ENA]
¡û
>WENV180544531
OCIQ01024565
[OCIQ] human gut metagenome; human gut
384
460
+
Arg
TCT
[ENA]
¡û
>WENV180544779
OCIR01020829
[OCIR] human gut metagenome; human gut
330
254
-
Arg
TCT
[ENA]
¡û
>WENV180545061
OCIS01029630
[OCIS] human gut metagenome; human gut
117
193
+
Arg
TCT
[ENA]
¡û
>WENV180545414
OCIT01010510
[OCIT] human gut metagenome; human gut
171
247
+
Arg
TCT
[ENA]
¡û
>WENV180555265
OCJO01105857
[OCJO] human gut metagenome; human gut
209
285
+
Arg
TCT
[ENA]
¡û
>WENV180567913
OCLM01011864
[OCLM] human gut metagenome; human gut
966
890
-
Arg
TCT
[ENA]
¡û
>WENV180572393
OCLU01059239
[OCLU] human gut metagenome; human gut
245
321
+
Arg
TCT
[ENA]
¡û
>WENV180629005
OCQP01015787
[OCQP] human gut metagenome; human gut
867
791
-
Arg
TCT
[ENA]
¡û
>WENV180630306
OCQT01027939
[OCQT] human gut metagenome; human gut
244
168
-
Arg
TCT
[ENA]
¡û
>WENV180633961
OCRA01118005
[OCRA] human gut metagenome; human gut
244
168
-
Arg
TCT
[ENA]
¡û
>WENV180678437
OCVV011984038
[OCVV] gut metagenome; gut
97
21
-
Arg
TCT
[ENA]
¡û
>WENV180678440
OCVV011984038
[OCVV] gut metagenome; gut
97
21
-
Arg
TCT
[ENA]
¡û
>WENV180818975
ODJQ01159756
[ODJQ] human metagenome; G_DNA_Stool
187
111
-
Arg
TCT
[ENA]
¡û
>WENV181057098
ODYJ01169796
[ODYJ] human metagenome; G_DNA_Stool
102
178
+
Arg
TCT
[ENA]
¡û
>WENV181075269
OEAO01102545
[OEAO] human metagenome; G_DNA_Tongue dorsum
143
219
+
Arg
TCT
[ENA]
¡û
>WENV181133247
OEGE01126555
[OEGE] human metagenome; G_DNA_Stool
132
56
-
Arg
TCT
[ENA]
¡û
>WENV181350308
OFMO01006708
[OFMO] human gut metagenome; human gut
2895
2971
+
Arg
TCT
[ENA]
¡û
>WENV181441952
OGDN01032897
[OGDN] human gut metagenome; human gut
1298
1374
+
Arg
TCT
[ENA]
¡û
>WENV181751384
OGQP01055642
[OGQP] human gut metagenome; faeces
561
637
+
Arg
TCT
[ENA]
¡û
>WENV182186439
OHOI01045696
[OHOI] human gut metagenome; feces
87
11
-
Arg
TCT
[ENA]
¡û
>WENV182753360
OJRC01006373
[OJRC] human gut metagenome; stool sample
898
822
-
Arg
TCT
[ENA]
¡û
>WENV182892212
OKSH01035428
[OKSH] human gut metagenome; faeces
680
756
+
Arg
TCT
[ENA]
¡û
>WENV183106747
OLNL01053527
[OLNL] human gut metagenome; faeces
364
440
+
Arg
TCT
[ENA]
¡û
>WENV183168409
OLOZ01016437
[OLOZ] human gut metagenome; faeces
951
875
-
Arg
TCT
[ENA]
¡û
>WENV183215851
OLQG01024341
[OLQG] human gut metagenome; faeces
775
851
+
Arg
TCT
[ENA]
¡û
>WENV183243806
OLRD01001089
[OLRD] human gut metagenome; faeces
8836
8760
-
Arg
TCT
[ENA]
¡û
>WENV183263086
OLRQ01049580
[OLRQ] human gut metagenome; faeces
412
488
+
Arg
TCT
[ENA]
¡û
>WENV183372369
OLXW01008705
[OLXW] human gut metagenome; feces
229
153
-
Arg
TCT
[ENA]
¡û
>WENV183502100
OMGS01040479
[OMGS] human gut metagenome; human gut
149
73
-
Arg
TCT
[ENA]
¡û
>WENV183655164
OQWD01007271
[OQWD] human gut metagenome; human gut
2505
2581
+
Arg
TCT
[ENA]
¡û
>WENV183746029
POVV01004207
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
2227
2303
+
Arg
TCT
[ENA]
¡û
>WENV183746173
POVV01012035
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
605
529
-
Arg
TCT
[ENA]
¡û
>C191138179
CP035281
Bacillota
Aminipila luticellarii JN-18 [CP035281]
1759989
1759913
-
Arg
TCT
-
¡û
>W1910373669
FUHN01000007
Bacillota
Mobilibacterium timonense Marseille-P3194 [FUHN]
356857
356781
-
Arg
TCT
[ENA]
¡û
>W1810797811
QRMS01000002
Bacillota
Emergencia timonensis AM07-24 [QRMS]
567041
566965
-
Arg
TCT
[ENA]
¡û
>W2010401542
FUHN01000007
Bacillota
Mobilibacterium timonense Marseille-P3194 [FUHN]
356857
356781
-
Arg
TCT
[ENA]
¡û
>W2110248014
JACRTA010000002
Bacillota
Mogibacterium sp. NSJ-24 [JACRTA]
181102
181178
+
Arg
TCT
[ENA]
¡û
>W2110249916
JACRWC010000029
Bacillota
Clostridiales Family XIII bacterium BX16 [JACRWC]
12126
12202
+
Arg
TCT
[ENA]
¡û
>W2110250327
JACRYT010000011
Bacillota
Mogibacterium sp. BX12 [JACRYT]
107913
107989
+
Arg
TCT
[ENA]
¡û
>C231016090
AP025568
Bacillota
Emergencia timonensis CE91-St49 [AP025568]
1839376
1839452
+
Arg
TCT
-
¡û
>W1511577801
LARA01000033
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
1355
1431
+
Arg
TCT
[ENA]
¡û
>W1511577826
LARA01000037
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
1037
1113
+
Arg
TCT
[ENA]
¡û
>W1511577973
LARA01000085
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
1333
1409
+
Arg
TCT
[ENA]
¡û
>W1511578090
LARA01000114
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
1035
1111
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK