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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235154 (50 seq.)
>WENV180402752
OBRQ01046081
[OBRQ] human gut metagenome; ENVO:feces
187
113
-
Ile2
CAT
[ENA]
¡û
>WENV180565710
OCLH01002648
[OCLH] human gut metagenome; human gut
2589
2513
-
Ile2
CAT
[ENA]
¡û
>WENV180567054
OCLL01003907
[OCLL] human gut metagenome; human gut
2406
2330
-
Ile2
CAT
[ENA]
¡û
>WENV180678981
OCVV012136143
[OCVV] gut metagenome; gut
142
218
+
Ile2
CAT
[ENA]
¡û
>WENV180678982
OCVV012136143
[OCVV] gut metagenome; gut
142
218
+
Ile2
CAT
[ENA]
¡û
>WENV180747996
ODHN01035847
[ODHN] human metagenome; G_DNA_Stool
723
799
+
Ile2
CAT
[ENA]
¡û
>WENV181436651
OGDF01024831
[OGDF] human gut metagenome; human gut
853
929
+
Ile2
CAT
[ENA]
¡û
>WENV181442029
OGDN01040109
[OGDN] human gut metagenome; human gut
1145
1069
-
Ile2
CAT
[ENA]
¡û
>WENV181683023
OGOU01048794
[OGOU] human gut metagenome; faeces
209
285
+
Ile2
CAT
[ENA]
¡û
>WENV181766466
OGQZ01001678
[OGQZ] human gut metagenome; faeces
15612
15536
-
Ile2
CAT
[ENA]
¡û
>WENV181911340
OGYD01001061
[OGYD] human gut metagenome; faeces
209
285
+
Ile2
CAT
[ENA]
¡û
>WENV181949995
OGZF01042955
[OGZF] human gut metagenome; faeces
476
400
-
Ile2
CAT
[ENA]
¡û
>WENV182154604
OHLP01002253
[OHLP] human gut metagenome; feces
6109
6033
-
Ile2
CAT
[ENA]
¡û
>WENV182267462
OHTZ01035810
[OHTZ] human gut metagenome; feces
537
613
+
Ile2
CAT
[ENA]
¡û
>WENV182300682
OHWM01033654
[OHWM] human gut metagenome; feces
85
161
+
Ile2
CAT
[ENA]
¡û
>WENV182608647
OJJV01000386
[OJJV] metagenome; faeces
31084
31008
-
Ile2
CAT
[ENA]
¡û
>WENV182620454
OJKI01005158
[OJKI] metagenome; faeces
1816
1740
-
Ile2
CAT
[ENA]
¡û
>WENV182764128
OJRP01002585
[OJRP] human gut metagenome; stool sample
331
407
+
Ile2
CAT
[ENA]
¡û
>WENV182945977
OKVK01003419
[OKVK] human gut metagenome; human gut
5695
5619
-
Ile2
CAT
[ENA]
¡û
>WENV182969280
OKXB01016807
[OKXB] human gut metagenome; human gut
865
941
+
Ile2
CAT
[ENA]
¡û
>WENV183044625
OLGE01001685
[OLGE] human gut metagenome; faeces
209
285
+
Ile2
CAT
[ENA]
¡û
>WENV183084048
OLJF01000026
[OLJF] metagenome; faeces
269897
269821
-
Ile2
CAT
[ENA]
¡û
>WENV183084907
OLJF01000799
[OLJF] metagenome; faeces
25613
25537
-
Ile2
CAT
[ENA]
¡û
>WENV183158144
OLOT01017768
[OLOT] human gut metagenome; faeces
31
107
+
Ile2
CAT
[ENA]
¡û
>WENV183176289
OLPF01004512
[OLPF] human gut metagenome; faeces
6035
5959
-
Ile2
CAT
[ENA]
¡û
>WENV183185542
OLPN01012938
[OLPN] human gut metagenome; faeces
2694
2618
-
Ile2
CAT
[ENA]
¡û
>WENV183200700
OLPW01003781
[OLPW] human gut metagenome; faeces
258
334
+
Ile2
CAT
[ENA]
¡û
>WENV183249076
OLRG01000828
[OLRG] human gut metagenome; faeces
108
184
+
Ile2
CAT
[ENA]
¡û
>WENV183339910
OLWL01001035
[OLWL] human gut metagenome; feces
209
285
+
Ile2
CAT
[ENA]
¡û
>WENV183346959
OLWT01000654
[OLWT] human gut metagenome; feces
20804
20728
-
Ile2
CAT
[ENA]
¡û
>WENV183351803
OLWZ01000548
[OLWZ] human gut metagenome; feces
20747
20671
-
Ile2
CAT
[ENA]
¡û
>WENV183359328
OLXH01031876
[OLXH] human gut metagenome; feces
38
114
+
Ile2
CAT
[ENA]
¡û
>WENV183364980
OLXN01000879
[OLXN] human gut metagenome; feces
865
941
+
Ile2
CAT
[ENA]
¡û
>WENV183382370
OLYL01000482
[OLYL] human gut metagenome; feces
843
919
+
Ile2
CAT
[ENA]
¡û
>WENV183438553
OMCF01000482
[OMCF] human gut metagenome; feces
843
919
+
Ile2
CAT
[ENA]
¡û
>WENV183453950
OMDE01021345
[OMDE] human gut metagenome; feces
503
427
-
Ile2
CAT
[ENA]
¡û
>WENV183457894
OMDM01000063
[OMDM] human gut metagenome; feces
51822
51746
-
Ile2
CAT
[ENA]
¡û
>WENV183640376
OQVL01003649
[OQVL] human gut metagenome; human gut
8343
8267
-
Ile2
CAT
[ENA]
¡û
>WENV183648606
OQVS01021645
[OQVS] human gut metagenome; human gut
373
449
+
Ile2
CAT
[ENA]
¡û
>WENV183649801
OQVT01005529
[OQVT] human gut metagenome; human gut
7283
7207
-
Ile2
CAT
[ENA]
¡û
>WENV183655875
OQWE01000852
[OQWE] human gut metagenome; human gut
1016
1092
+
Ile2
CAT
[ENA]
¡û
>WENV170056977
CDZG01021958
[CDZG] gut metagenome; human stools
400
476
+
Met
CAT
[ENA]
¡û
>WENV170093576
CEAH01031140
[CEAH] gut metagenome; human stools
220000
219924
-
Met
CAT
[ENA]
¡û
>WENV170101666
CEAR01040903
[CEAR] gut metagenome; human stools
895
971
+
Met
CAT
[ENA]
¡û
>WENV170105570
CEBV01014877
[CEBV] gut metagenome; human stools
2113
2037
-
Met
CAT
[ENA]
¡û
>WENV170108571
CECA01036883
[CECA] gut metagenome; human stools
25842
25766
-
Met
CAT
[ENA]
¡û
>WENV170110056
CECF01008733
[CECF] gut metagenome; human stools
18001
17925
-
Met
CAT
[ENA]
¡û
>W1910504121
FYDE01000005
Bacillota
Marasmitruncus massiliensis Marseille-P3646 [FYDE]
159137
159061
-
Met
CAT
[ENA]
¡û
>W2010327272
CACVRI010000021
Bacillota
Ruminococcaceae bacterium [CACVRI]
6685
6609
-
Ile2
CAT
[ENA]
¡û
>W2011483312
RQYD01000086
Bacillota
Clostridiales bacterium COT073_COT-073 [RQYD]
355
428
+
Ile2
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK