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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235271 (46 seq.)
>W131108962
APGP01000085
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
43274
43196
-
Pro
GGG
[ENA]
¡û
>W131218309
ATXO01000013
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
51316
51394
+
Pro
GGG
[ENA]
¡û
>C006926
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
1891325
1891247
-
Pro
GGG
[Ensembl]
¡û
>WENV180013808
FPIC01000778
[FPIC] soil metagenome; Soil
2440
2362
-
Pro
GGG
[ENA]
¢þ
>WENV181226059
OFDK01000011
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
102833
102911
+
Pro
GGG
[ENA]
¢þ
>WENV181226095
OFDK01000036
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
46683
46761
+
Pro
GGG
[ENA]
¢þ
>WENV181285356
OFGS01000027
[OFGS] hot springs metagenome; Water and soil
7736
7658
-
Pro
GGG
[ENA]
¢þ
>WENV181408698
OGCH01009002
[OGCH] hot springs metagenome; hot springs
1751
1673
-
Pro
GGG
[ENA]
¢þ
>C191131112
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
1549385
1549463
+
Pro
GGG
-
¡û
>W09104542
AALW01000018
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
26709
26787
+
Pro
GGG
[ENA]
¡û
>W09113806
ABYZ01000002
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
186873
186795
-
Pro
GGG
[ENA]
¡û
>C09100829
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
1650389
1650467
+
Pro
GGG
[Ensembl]
¡û
>W1911155332
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1830765
1830843
+
Pro
GGG
[ENA]
¡û
>W1911244018
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
988220
988298
+
Pro
GGG
[ENA]
¡û
>W1911244070
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
1367707
1367785
+
Pro
GGG
[ENA]
¡û
>W1911244120
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
1920672
1920750
+
Pro
GGG
[ENA]
¡û
>W1911244197
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1170470
1170392
-
Pro
GGG
[ENA]
¡û
>W1911244251
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
579424
579346
-
Pro
GGG
[ENA]
¡û
>W1911572560
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
1108646
1108568
-
Pro
GGG
[ENA]
¡û
>W1911572584
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
2627046
2627124
+
Pro
GGG
[ENA]
¡û
>W1911572655
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
1211631
1211553
-
Pro
GGG
[ENA]
¡û
>W1810052274
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
665679
665601
-
Pro
GGG
[ENA]
¡û
>W1810071913
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1154738
1154660
-
Pro
GGG
[ENA]
¡û
>W1810071950
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
2172486
2172408
-
Pro
GGG
[ENA]
¡û
>W1810071985
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
2553105
2553183
+
Pro
GGG
[ENA]
¡û
>W1810368005
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
2416144
2416222
+
Pro
GGG
[ENA]
¡û
>C10103663
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
1108462
1108384
-
Pro
GGG
[Ensembl]
¡û
>C11105228
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1203201
1203123
-
Pro
GGG
[Ensembl]
¡û
>C11105381
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
1652109
1652187
+
Pro
GGG
[Ensembl]
¡û
>C11105453
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
1321520
1321442
-
Pro
GGG
[Ensembl]
¡û
>C11105467
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
1050836
1050914
+
Pro
GGG
[Ensembl]
¡û
>C11105851
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1430145
1430223
+
Pro
GGG
[Ensembl]
¡û
>W11139363
AEKB01000001
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
165236
165314
+
Pro
GGG
[ENA]
¡û
>W11139421
AEKC01000011
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
13678
13600
-
Pro
GGG
[ENA]
¡û
>W11139480
AEKD01000044
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
18196
18118
-
Pro
GGG
[ENA]
¡û
>W1511563949
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
1818884
1818962
+
Pro
GGG
[ENA]
¡û
>W1511564013
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
46895
46817
-
Pro
GGG
[ENA]
¡û
>W1511564058
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
1682623
1682701
+
Pro
GGG
[ENA]
¡û
>W1710603761
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
1653344
1653266
-
Pro
GGG
[ENA]
¡û
>W1710603803
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
803936
804014
+
Pro
GGG
[ENA]
¡û
>W1710603900
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
1750772
1750850
+
Pro
GGG
[ENA]
¡û
>W1710605061
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
815895
815973
+
Pro
GGG
[ENA]
¡û
>W1710609683
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
1571987
1571909
-
Pro
GGG
[ENA]
¡û
>W1710609729
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
973138
973060
-
Pro
GGG
[ENA]
¡û
>W1710609752
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
1922327
1922405
+
Pro
GGG
[ENA]
¡û
>W1710609797
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
1914869
1914947
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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