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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235346 (36 seq.)
>W1710822129
LKUQ01000002
Actinomycetota
Bifidobacterium longum [LKUQ]
184
257
+
Arg
CCG
[ENA]
¡û
>W131145963
AQGL01000005
Actinomycetota
Bifidobacterium longum D2957 [AQGL]
34062
33989
-
Arg
CCG
[ENA]
¡û
>WENV180407102
OBUQ01000397
[OBUQ] human gut metagenome; faeces
13054
12981
-
Arg
CCG
[ENA]
¢þ
>WENV180439185
OBWS01011908
[OBWS] human gut metagenome; faeces
785
858
+
Arg
CCG
[ENA]
¢þ
>WENV181216999
OFCH01000019
[OFCH] metagenome; Human gut stool
53203
53130
-
Arg
CCG
[ENA]
¢þ
>WENV181220081
OFCQ01000055
[OFCQ] metagenome; Human gut stool
84424
84351
-
Arg
CCG
[ENA]
¢þ
>WENV181225719
OFDJ01000053
[OFDJ] metagenome; Human gut stool
62162
62089
-
Arg
CCG
[ENA]
¢þ
>W141524345
JGYZ01000004
Actinomycetota
Bifidobacterium longum subsp. longum [JGYZ]
222
149
-
Arg
CCG
[ENA]
¡û
>C191208467
LR134354
Actinomycetota
Bifidobacterium longum subsp. infantis NCTC11817 [LR134354]
1464113
1464186
+
Arg
CCG
-
¡û
>C191209151
LR134369
Actinomycetota
Bifidobacterium longum NCTC11818 [LR134369]
1125569
1125496
-
Arg
CCG
-
¡û
>C09102378
CP001095
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [CP001095]
1464318
1464391
+
Arg
CCG
-
¡û
>W1910343129
FTRM01000010
Actinomycetota
Bifidobacterium longum [FTRM]
39088
39161
+
Arg
CCG
[ENA]
¡û
>W1910343218
FTRN01000031
Actinomycetota
Bifidobacterium longum [FTRN]
18871
18798
-
Arg
CCG
[ENA]
¡û
>W1910343432
FTRR01000017
Actinomycetota
Bifidobacterium longum [FTRR]
21303
21230
-
Arg
CCG
[ENA]
¡û
>W1810813779
QRZU01000014
Actinomycetota
Bifidobacterium longum AF13-41 [QRZU]
34098
34025
-
Arg
CCG
[ENA]
¡û
>W1810813998
QRZY01000015
Actinomycetota
Bifidobacterium longum AF13-34 [QRZY]
475
548
+
Arg
CCG
[ENA]
¡û
>W1810814738
QSAM01000017
Actinomycetota
Bifidobacterium longum AF11-41 [QSAM]
673
746
+
Arg
CCG
[ENA]
¡û
>W1810815035
QSAR01000029
Actinomycetota
Bifidobacterium longum AF11-12 [QSAR]
957
884
-
Arg
CCG
[ENA]
¡û
>W1810815736
QSBF01000007
Actinomycetota
Bifidobacterium longum AF05-2 [QSBF]
128090
128017
-
Arg
CCG
[ENA]
¡û
>W1810815797
QSBG01000007
Actinomycetota
Bifidobacterium longum AF05-16 [QSBG]
33416
33489
+
Arg
CCG
[ENA]
¡û
>W1510059595
CCWN01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1206122787 [CCWN]
4164
4237
+
Arg
CCG
[ENA]
¡û
>W1510059661
CCWO01000034
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1307292462 [CCWO]
4293
4366
+
Arg
CCG
[ENA]
¡û
>W1510059728
CCWP01000029
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401111250 [CCWP]
3615
3688
+
Arg
CCG
[ENA]
¡û
>W1510059795
CCWQ01000023
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621b [CCWQ]
4292
4365
+
Arg
CCG
[ENA]
¡û
>W1510059861
CCWR01000018
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845a [CCWR]
39040
39113
+
Arg
CCG
[ENA]
¡û
>W1510059928
CCWS01000020
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621a [CCWS]
39068
39141
+
Arg
CCG
[ENA]
¡û
>W1510059995
CCWT01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845b [CCWT]
39064
39137
+
Arg
CCG
[ENA]
¡û
>W1510060062
CCWU01000020
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401242951 [CCWU]
39036
39109
+
Arg
CCG
[ENA]
¡û
>C11103157
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1464109
1464182
+
Arg
CCG
-
¡û
>C11103224
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1464109
1464182
+
Arg
CCG
-
¡û
>C11103462
AP010888
Actinomycetota
Bifidobacterium longum subsp. longum JCM 1217 [AP010888]
1125569
1125496
-
Arg
CCG
[Ensembl]
¡û
>W1511357686
JRWN01000006
Actinomycetota
Bifidobacterium longum subsp. longum VMKB44 [JRWN]
54912
54839
-
Arg
CCG
[ENA]
¡û
>C161038261
CP011965
Actinomycetota
Bifidobacterium longum subsp. longum CCUG30698 [CP011965]
1190981
1190908
-
Arg
CCG
[Ensembl]
¡û
>W1610518904
JDTT01000026
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM DSM 20088 [JDTT]
47065
46992
-
Arg
CCG
[ENA]
¡û
>W1610686188
LKUQ01000002
Actinomycetota
Bifidobacterium longum [LKUQ]
184
257
+
Arg
CCG
[ENA]
¡û
>W1710534451
FNRW01000002
Actinomycetota
Bifidobacterium longum [FNRW]
604878
604805
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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