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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23538 (76 seq.)
>W1710785182
LJHQ01000018
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
17856
17767
-
Ser
CGA
[ENA]
¡û
>W1710858014
LMAR01000023
Alphaproteobacteria
Bosea thiooxidans [LMAR]
139774
139685
-
Ser
CGA
[ENA]
¡û
>W1710869480
LMJT01000012
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
272919
273008
+
Ser
CGA
[ENA]
¡û
>W1710869536
LMJU01000017
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
583373
583284
-
Ser
CGA
[ENA]
¡û
>W1710869637
LMJW01000020
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
396973
397062
+
Ser
CGA
[ENA]
¡û
>W1710879515
LMRT01000009
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
375934
376023
+
Ser
CGA
[ENA]
¡û
>W1711072937
LSIB01000065
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
44275
44364
+
Ser
CGA
[ENA]
¡û
>W1711073148
LSIG01000213
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
85769
85858
+
Ser
CGA
[ENA]
¡û
>W1711073318
LSIK01000328
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
39817
39728
-
Ser
CGA
[ENA]
¡û
>W1711073820
LSIY01000200
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
39817
39728
-
Ser
CGA
[ENA]
¡û
>W1711074351
LSJL01000107
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
39817
39728
-
Ser
CGA
[ENA]
¡û
>W1711074506
LSJP01000182
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
39817
39728
-
Ser
CGA
[ENA]
¡û
>W1711074606
LSJR01000272
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
36155
36066
-
Ser
CGA
[ENA]
¡û
>W1711074748
LSJU01001321
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
3621
3532
-
Ser
CGA
[ENA]
¡û
>W1711074782
LSJV01000177
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
39753
39664
-
Ser
CGA
[ENA]
¡û
>W1711074860
LSJX01000192
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
36158
36069
-
Ser
CGA
[ENA]
¡û
>W1711075582
LSKN01000245
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
25907
25996
+
Ser
CGA
[ENA]
¡û
>W1711384709
MEDI01000391
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
14337
14248
-
Ser
CGA
[ENA]
¡û
>W1711502408
MKSQ01000026
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
110711
110622
-
Ser
CGA
[ENA]
¡û
>C171049975
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
4790844
4790755
-
Ser
CGA
-
¡û
>C171057727
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
586813
586902
+
Ser
CGA
-
¡û
>WENV181227014
OFDN01000977
[OFDN] hot springs metagenome; Water
11368
11279
-
Ser
CGA
[ENA]
¢þ
>WENV181415460
OGCL01011461
[OGCL] hot springs metagenome; Hot spring water
95
6
-
Ser
CGA
[ENA]
¢þ
>WENV183741083
PJUF01038045
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
266
177
-
Ser
CGA
[ENA]
¢þ
>WENV170680942
LFEF01036808
[LFEF] freshwater metagenome; waterbloom
17332
17243
-
Ser
CGA
[ENA]
¢þ
>WENV170714567
LNFM01082162
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1732
1643
-
Ser
CGA
[ENA]
¢þ
>WENV170714712
LNFM01095276
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
86
-1
-
Ser
CGA
[ENA]
¢þ
>WENV170714729
LNFM01096327
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1397
1483
+
Ser
CGA
[ENA]
¢þ
>WENV171003159
NNBT01001976
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
55664
55753
+
Ser
CGA
[ENA]
¢þ
>WENV171003818
NNBV01001290
[NNBV] plant metagenome; symbiotic tissue sample KVS11
73906
73817
-
Ser
CGA
[ENA]
¢þ
>C181063185
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
1178037
1178126
+
Ser
CGA
-
¡û
>C191014018
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
5464625
5464714
+
Ser
CGA
-
¡û
>W141805323
JPKG01000061
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
80536
80447
-
Ser
CGA
[ENA]
¡û
>W141815806
JQJJ01000010
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
854858
854947
+
Ser
CGA
[ENA]
¡û
>W1910501714
FYAS01000014
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
152466
152555
+
Ser
CGA
[ENA]
¡û
>W1910635411
LNCQ01000029
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
68607
68696
+
Ser
CGA
[ENA]
¡û
>W1910840113
MZXT01000006
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
43924
44013
+
Ser
CGA
[ENA]
¡û
>W1910840174
MZXU01000017
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
43750
43839
+
Ser
CGA
[ENA]
¡û
>W1910847652
NBDP01000015
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
77616
77527
-
Ser
CGA
[ENA]
¡û
>W1810252010
PQFZ01000006
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
92241
92330
+
Ser
CGA
[ENA]
¡û
>W1810463354
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
2557491
2557580
+
Ser
CGA
[ENA]
¡û
>W1810676907
QKMI01000009
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
277505
277416
-
Ser
CGA
[ENA]
¡û
>W1810783292
QQTO01000005
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
125223
125312
+
Ser
CGA
[ENA]
¡û
>W1810783355
QQTP01000010
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
125223
125312
+
Ser
CGA
[ENA]
¡û
>SRA1036016
SRR035089.427391
454 Sequencing (SRP001810)
188
277
+
Ser
CGA
[SRA]
>W1511353004
JROW01000056
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
22204
22115
-
Ser
CGA
[ENA]
¡û
>C161070695
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
3329784
3329695
-
Ser
CGA
[Ensembl]
¡û
>W1610550626
JXTJ01000008
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
571306
571395
+
Ser
CGA
[ENA]
¡û
>W1610617173
LGSZ01000047
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
122262
122173
-
Ser
CGA
[ENA]
¡û
>W1610648988
LJHQ01000018
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
17856
17767
-
Ser
CGA
[ENA]
¡û
>W1610720360
LMAR01000023
Alphaproteobacteria
Bosea thiooxidans [LMAR]
139774
139685
-
Ser
CGA
[ENA]
¡û
>W1610731826
LMJT01000012
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
272919
273008
+
Ser
CGA
[ENA]
¡û
>W1610731882
LMJU01000017
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
583373
583284
-
Ser
CGA
[ENA]
¡û
>W1610731983
LMJW01000020
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
396973
397062
+
Ser
CGA
[ENA]
¡û
>W1610741861
LMRT01000009
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
375934
376023
+
Ser
CGA
[ENA]
¡û
>W1610912197
LSIB01000065
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
44275
44364
+
Ser
CGA
[ENA]
¡û
>W1610912453
LSIG01000213
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
85769
85858
+
Ser
CGA
[ENA]
¡û
>W1610912623
LSIK01000328
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
39817
39728
-
Ser
CGA
[ENA]
¡û
>W1610913125
LSIY01000200
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
39817
39728
-
Ser
CGA
[ENA]
¡û
>W1610913656
LSJL01000107
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
39817
39728
-
Ser
CGA
[ENA]
¡û
>W1610913811
LSJP01000182
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
39817
39728
-
Ser
CGA
[ENA]
¡û
>W1610913911
LSJR01000272
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
36155
36066
-
Ser
CGA
[ENA]
¡û
>W1610914053
LSJU01001321
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
3621
3532
-
Ser
CGA
[ENA]
¡û
>W1610914087
LSJV01000177
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
39753
39664
-
Ser
CGA
[ENA]
¡û
>W1610914165
LSJX01000192
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
36158
36069
-
Ser
CGA
[ENA]
¡û
>W1610914887
LSKN01000245
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
25907
25996
+
Ser
CGA
[ENA]
¡û
>W1710064176
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
2501631
2501720
+
Ser
CGA
[ENA]
¡û
>W1710515693
FNBZ01000003
Alphaproteobacteria
Bosea robiniae [FNBZ]
333124
333213
+
Ser
CGA
[ENA]
¡û
>W1710538956
FNUY01000006
Alphaproteobacteria
Bosea lathyri [FNUY]
96158
96247
+
Ser
CGA
[ENA]
¡û
>W1710544044
FOAN01000014
Alphaproteobacteria
Bosea lupini [FOAN]
21770
21681
-
Ser
CGA
[ENA]
¡û
>W1710556985
FOKP01000006
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
229613
229702
+
Ser
CGA
[ENA]
¡û
>W1710564915
FOQV01000004
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
140612
140701
+
Ser
CGA
[ENA]
¡û
>W1710596420
FTMO01000001
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
428929
429018
+
Ser
CGA
[ENA]
¡û
>W1710603284
FUYX01000005
Alphaproteobacteria
Bosea thiooxidans [FUYX]
270892
270981
+
Ser
CGA
[ENA]
¡û
>W1710660461
JXTJ01000008
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
571306
571395
+
Ser
CGA
[ENA]
¡û
>W1710742787
LGSZ01000047
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
122262
122173
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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