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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235419 (67 seq.)
>W1711509615
MKZT01000005
Gammaproteobacteria
Kushneria phosphatilytica YCWA18 [MKZT]
100303
100379
+
Met
CAT
[ENA]
¡û
>W1711687836
MSCW01000011
Gammaproteobacteria
Marinobacter lutaoensis [MSCW]
56362
56286
-
Met
CAT
[ENA]
¡û
>WENV180209537
OBAL01003328
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1623
1699
+
Ile2
CAT
[ENA]
¡û
>WENV180209647
OBAL01010523
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1028
952
-
Ile2
CAT
[ENA]
¡û
>WENV180365949
OBOC01078026
[OBOC] marine metagenome; ocean water
344
420
+
Ile2
CAT
[ENA]
¡û
>WENV180384917
OBOZ01000356
[OBOZ] marine metagenome; Sea Water
453
529
+
Ile2
CAT
[ENA]
¡û
>WENV180391822
OBPN01056428
[OBPN] marine metagenome; seawater
355
279
-
Ile2
CAT
[ENA]
¡û
>WENV180394956
OBPT01000041
[OBPT] marine metagenome; ENVO:00002010 seawater
3951
4027
+
Ile2
CAT
[ENA]
¡û
>WENV180585276
OCOL01000131
[OCOL] marine metagenome; ENVO:00002010
5456
5380
-
Ile2
CAT
[ENA]
¡û
>WENV180590740
OCOU01006623
[OCOU] marine metagenome; Water
95
19
-
Ile2
CAT
[ENA]
¡û
>WENV180593474
OCOX01050492
[OCOX] marine metagenome; ENVO:00002010
312
388
+
Ile2
CAT
[ENA]
¡û
>WENV180636974
OCRF01140318
[OCRF] marine metagenome; niskin bottle
205
129
-
Ile2
CAT
[ENA]
¡û
>WENV182549563
OJBY01002332
[OJBY] seawater metagenome; Sea water
408
484
+
Ile2
CAT
[ENA]
¡û
>WENV182550770
OJCB01000051
[OJCB] seawater metagenome; Sea water
9655
9579
-
Ile2
CAT
[ENA]
¡û
>WENV182580215
OJGU01017762
[OJGU] seawater metagenome; Sea water
5
81
+
Ile2
CAT
[ENA]
¡û
>WENV182582051
OJGZ01007823
[OJGZ] seawater metagenome; Sea water
511
587
+
Ile2
CAT
[ENA]
¡û
>WENV182592884
OJIS01000486
[OJIS] seawater metagenome; Sea water
4010
4086
+
Ile2
CAT
[ENA]
¡û
>WENV183062135
OLID01000105
[OLID] seawater metagenome; Sea water
8931
8855
-
Ile2
CAT
[ENA]
¡û
>ENV08000065
ABLU01127399
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
14
90
+
Met
CAT
[ENA]
¡û
>WENV170016533
AZIK01012140
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
79
3
-
Met
CAT
[ENA]
¡û
>WENV170301818
CESH01073376
[CESH] marine metagenome genome assembly TARA_094_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2814
2890
+
Met
CAT
[ENA]
¡û
>WENV170379463
CETV01130701
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
419
495
+
Met
CAT
[ENA]
¡û
>WENV170473057
CEVH01001558
[CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
405
329
-
Met
CAT
[ENA]
¡û
>WENV170822578
MDSY01042735
[MDSY] marine metagenome; seawater
921
997
+
Met
CAT
[ENA]
¡û
>WENV170842491
MDSZ01241593
[MDSZ] marine metagenome; seawater
30130
30054
-
Met
CAT
[ENA]
¡û
>WENV170862657
MDTB01080484
[MDTB] marine metagenome; seawater
34002
34078
+
Met
CAT
[ENA]
¡û
>WENV170871689
MDTB01209123
[MDTB] marine metagenome; seawater
1545
1469
-
Met
CAT
[ENA]
¡û
>WENV170878451
MDTC01076781
[MDTC] marine metagenome; seawater
7629
7705
+
Met
CAT
[ENA]
¡û
>WENV170913934
MDTE01140934
[MDTE] marine metagenome; seawater
2523
2599
+
Met
CAT
[ENA]
¡û
>WENV170917714
MDTE01196411
[MDTE] marine metagenome; seawater
3829
3753
-
Met
CAT
[ENA]
¡û
>W1910504715
FYDQ01000012
Gammaproteobacteria
Pseudomonas sp. Irchel 3F5 [FYDQ]
57975
58051
+
Met
CAT
[ENA]
¡û
>W1910584134
JXSI01000014
Gammaproteobacteria
Pseudomonas sp. GZJR-8 [JXSI]
50752
50828
+
Met
CAT
[ENA]
¡û
>W1911278122
NTFI01000002
Gammaproteobacteria
Marinobacter guineae M3B [NTFI]
42739
42815
+
Met
CAT
[ENA]
¡û
>W1810786967
QRDJ01000006
Gammaproteobacteria
Kushneria indalinina DSM 14324 [QRDJ]
425381
425457
+
Met
CAT
[ENA]
¡û
>W2010437613
JAAAMT010000046
Gammaproteobacteria
R5(2019) [JAAAMT]
3940
3864
-
Ile2
CAT
[ENA]
¡û
>W2011071841
NTFI01000002
Gammaproteobacteria
Marinobacter guineae M3B [NTFI]
42739
42815
+
Ile2
CAT
[ENA]
¡û
>W2011133671
NWCB01000014
Gammaproteobacteria
Pseudomonas donghuensis SVBP6 [NWCB]
58019
58095
+
Ile2
CAT
[ENA]
¡û
>W2011443418
RJVM01000004
Gammaproteobacteria
Pseudomonas psychrophila BIGb0477 [RJVM]
601858
601782
-
Ile2
CAT
[ENA]
¡û
>W2011537901
SCMO01000015
Gammaproteobacteria
Pseudomonas sp. 2FE [SCMO]
53784
53860
+
Ile2
CAT
[ENA]
¡û
>W2011537945
SCMP01000015
Gammaproteobacteria
Pseudomonas sp. 2FG [SCMP]
58693
58617
-
Ile2
CAT
[ENA]
¡û
>W2011915661
UUJH01000056
Gammaproteobacteria
Pseudomonas sp. 286 [UUJH]
44434
44510
+
Ile2
CAT
[ENA]
¡û
>W2012131987
VSRO01000012
Gammaproteobacteria
Pseudomonas synxantha MCP106 [VSRO]
56802
56878
+
Ile2
CAT
[ENA]
¡û
>W2012141827
VTPX01000007
Gammaproteobacteria
Salinicola sp. L3 [VTPX]
6342
6266
-
Ile2
CAT
[ENA]
¡û
>W2012205289
VXCP01000046
Gammaproteobacteria
Pseudomonas sp. PS24 [VXCP]
55738
55814
+
Ile2
CAT
[ENA]
¡û
>W2012329375
WHOX01000013
Gammaproteobacteria
Pseudomonas fluorescens BAV 3226 [WHOX]
5713
5637
-
Ile2
CAT
[ENA]
¡û
>W2012342137
WIVR01000024
Gammaproteobacteria
Pseudomonas sp. FSL R10-1350 [WIVR]
13858
13782
-
Ile2
CAT
[ENA]
¡û
>W2012342469
WIVX01000015
Gammaproteobacteria
Pseudomonas helleri FSL R10-2107 [WIVX]
52477
52553
+
Ile2
CAT
[ENA]
¡û
>W2012342674
WIWA01000032
Gammaproteobacteria
Pseudomonas helleri FSL R10-2216 [WIWA]
52477
52553
+
Ile2
CAT
[ENA]
¡û
>W2012342841
WIWD01000018
Gammaproteobacteria
Pseudomonas helleri FSL R10-2342 [WIWD]
52645
52721
+
Ile2
CAT
[ENA]
¡û
>W2012342970
WIWF01000022
Gammaproteobacteria
Pseudomonas helleri FSL R10-2932 [WIWF]
54307
54383
+
Ile2
CAT
[ENA]
¡û
>W2012343045
WIWG01000061
Gammaproteobacteria
Pseudomonas helleri FSL R10-2940 [WIWG]
4838
4762
-
Ile2
CAT
[ENA]
¡û
>W2110050464
BMZM01000001
Gammaproteobacteria
Kushneria pakistanensis KCTC 42082 [BMZM]
520431
520507
+
Ile2
CAT
[ENA]
¡û
>W2110137700
JAAEBR010000003
Gammaproteobacteria
Pseudomonas fragi TMW2.2082 [JAAEBR]
58165
58241
+
Ile2
CAT
[ENA]
¡û
>W2110611309
JAHKPI010000020
Gammaproteobacteria
Marinobacter sp. F3R08 [JAHKPI]
38401
38477
+
Ile2
CAT
[ENA]
¡û
>C211170805
CP063073
Gammaproteobacteria
Pseudomonas poae PMA22 [CP063073]
5968177
5968101
-
Ile2
CAT
-
¡û
>C211180372
CP063780
Gammaproteobacteria
Pseudomonas sp. OST1909 [CP063780]
5915480
5915556
+
Ile2
CAT
-
¡û
>C211282559
CP071007
Gammaproteobacteria
Pseudomonas sp. SORT22 [CP071007]
667382
667306
-
Ile2
CAT
-
¡û
>C211327929
CP074078
Gammaproteobacteria
Pseudomonas synxantha 27 [CP074078]
1777803
1777727
-
Ile2
CAT
-
¡û
>C241286884
CP129121
Gammaproteobacteria
Halomonas halophila CCM 3662 [CP129121]
1043557
1043633
+
Ile2
CAT
-
¡û
>C241346613
CP139141
Gammaproteobacteria
Pseudomonas sp. HR96 [CP139141]
613003
612927
-
Ile2
CAT
-
¡û
>W1510800545
JBOP01000049
Gammaproteobacteria
Pseudomonas putida PA14H7 [JBOP]
124398
124322
-
Met
CAT
[ENA]
¡û
>W1511531161
JYLD01000014
Gammaproteobacteria
Pseudomonas helleri DSM 29165 [JYLD]
52490
52566
+
Met
CAT
[ENA]
¡û
>W121019025
AGTR01000008
Gammaproteobacteria
Marinobacter manganoxydans MnI7-9 [AGTR]
17158
17234
+
Met
CAT
[ENA]
¡û
>W121039139
AHPP01000001
Gammaproteobacteria
Pseudomonas synxantha BG33R [AHPP]
2546196
2546272
+
Met
CAT
[ENA]
¡û
>W1710527185
FNKV01000001
Gammaproteobacteria
Pseudomonas sp. UC 17F4 [FNKV]
1232254
1232178
-
Met
CAT
[ENA]
¡û
>W1710572743
FOWX01000004
Gammaproteobacteria
Pseudomonas borbori [FOWX]
193540
193464
-
Met
CAT
[ENA]
¡û
>W1710582917
FQUJ01000003
Gammaproteobacteria
Halomonas ilicicola DSM 19980 [FQUJ]
22304
22228
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK