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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235457 (52 seq.)
>W1711193824
LWUW01000162
Betaproteobacteria
Burkholderia pseudomallei [LWUW]
82983
83058
+
Thr
CGT
[ENA]
¡û
>W1711193907
LWUY01000014
Betaproteobacteria
Burkholderia pseudomallei [LWUY]
79499
79424
-
Thr
CGT
[ENA]
¡û
>W1711194433
LWVI01000259
Betaproteobacteria
Burkholderia pseudomallei [LWVI]
21273
21198
-
Thr
CGT
[ENA]
¡û
>W1711195159
LWVW01000112
Betaproteobacteria
Burkholderia pseudomallei [LWVW]
78961
78886
-
Thr
CGT
[ENA]
¡û
>W1711198752
LWYM01000229
Betaproteobacteria
Burkholderia pseudomallei [LWYM]
81564
81639
+
Thr
CGT
[ENA]
¡û
>W1711200771
LWZZ01000222
Betaproteobacteria
Burkholderia pseudomallei [LWZZ]
15217
15292
+
Thr
CGT
[ENA]
¡û
>W1711201290
LXAJ01000121
Betaproteobacteria
Burkholderia pseudomallei [LXAJ]
185271
185346
+
Thr
CGT
[ENA]
¡û
>W1711201672
LXAR01000025
Betaproteobacteria
Burkholderia pseudomallei [LXAR]
137406
137331
-
Thr
CGT
[ENA]
¡û
>W1711201792
LXAT01000104
Betaproteobacteria
Burkholderia pseudomallei [LXAT]
204293
204218
-
Thr
CGT
[ENA]
¡û
>W1711202314
LXBD01000024
Betaproteobacteria
Burkholderia pseudomallei [LXBD]
137443
137368
-
Thr
CGT
[ENA]
¡û
>W1711203126
LXBS01000311
Betaproteobacteria
Burkholderia pseudomallei [LXBS]
41136
41061
-
Thr
CGT
[ENA]
¡û
>W1711204724
LXCX01000074
Betaproteobacteria
Burkholderia pseudomallei [LXCX]
79809
79734
-
Thr
CGT
[ENA]
¡û
>W1711205339
LXDI01000227
Betaproteobacteria
Burkholderia pseudomallei [LXDI]
18660
18735
+
Thr
CGT
[ENA]
¡û
>W1711206042
LXDW01000070
Betaproteobacteria
Burkholderia pseudomallei [LXDW]
45367
45292
-
Thr
CGT
[ENA]
¡û
>W1711206440
LXEE01000013
Betaproteobacteria
Burkholderia pseudomallei [LXEE]
66599
66524
-
Thr
CGT
[ENA]
¡û
>W1711206630
LXEH01000152
Betaproteobacteria
Burkholderia pseudomallei [LXEH]
141218
141143
-
Thr
CGT
[ENA]
¡û
>W1711384085
MECZ01000001
Betaproteobacteria
Burkholderia pseudomallei [MECZ]
2610753
2610678
-
Thr
CGT
[ENA]
¡û
>C171056004
CP017052
Betaproteobacteria
Burkholderia pseudomallei MSHR3763 [CP017052, CP017053]
2633009
2632934
-
Thr
CGT
-
¡û
>C171078309
CP018372
Betaproteobacteria
Burkholderia pseudomallei 2002721171 [CP018371, CP018372]
3118255
3118330
+
Thr
CGT
-
¡û
>W131091442
AOGU01000007
Betaproteobacteria
Burkholderia pseudomallei MSHR1043 [AOGU]
83127
83202
+
Thr
CGT
[ENA]
¡û
>C028138
CP000525
Betaproteobacteria
Burkholderia mallei SAVP1 [CP000525, CP000526]
2605070
2605145
+
Thr
CGT
[Ensembl]
¡û
>w027200
ABBQ01000458
Betaproteobacteria
Burkholderia pseudomallei NCTC 13177 [ABBQ]
10140
10217
+
Thr
CGT
[ENA]
¡û
>w006720
AAHV02000039
Betaproteobacteria
Burkholderia pseudomallei Pasteur [AAHV]
42177
42254
+
Thr
CGT
[ENA]
¡û
>w006560
AAHS02000098
Betaproteobacteria
Burkholderia pseudomallei 1710a [AAHS]
5032
5109
+
Thr
CGT
[ENA]
¡û
>W141137210
AWGS01000009
Betaproteobacteria
Burkholderia mallei A193 [AWGS]
9207
9132
-
Thr
CGT
[ENA]
¡û
>W08012875
ABKT01000023
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
17717
17792
+
Thr
CGT
[ENA]
¡û
>WENV170018784
BBPD01000890
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
15018
15093
+
Thr
CGT
[ENA]
¢þ
>WENV170019918
BBPE01001437
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
14565
14640
+
Thr
CGT
[ENA]
¢þ
>C151006305
CP004379
Betaproteobacteria
Burkholderia pseudomallei 1026b [CP004379,CP004380]
3820745
3820820
+
Thr
CGT
[Ensembl]
¡û
>C151037012
CP008777
Betaproteobacteria
Burkholderia pseudomallei 576 [CP008777, CP008778]
1531924
1531849
-
Thr
CGT
[Ensembl]
¡û
>C151037125
CP008781
Betaproteobacteria
Burkholderia pseudomallei Mahidol-1106a [CP008781, CP008782]
2794329
2794254
-
Thr
CGT
[Ensembl]
¡û
>C151037196
CP008784
Betaproteobacteria
Burkholderia pseudomallei MSHR5855 [CP008783, CP008784]
1696198
1696123
-
Thr
CGT
[Ensembl]
¡û
>C151044882
CP009157
Betaproteobacteria
Burkholderia pseudomallei TSV202 [CP009156, CP009157]
4094949
4094874
-
Thr
CGT
-
¡û
>C151064083
CP010065
Betaproteobacteria
Burkholderia mallei 2002721276 [CP010065, CP010066]
2490931
2491006
+
Thr
CGT
[Ensembl]
¡û
>W1530023868
JTDM01000011
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
99645
99720
+
Thr
CGT
[ENA]
¡û
>C10300252
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
1405939
1406014
+
Thr
CGT
[Ensembl]
¡û
>W11302014
CACR01001443
Betaproteobacteria
Thauera selenatis AX [CACR]
18132
18057
-
Thr
CGT
[ENA]
¡û
>W1510533143
CSKC01000019
Betaproteobacteria
Burkholderia pseudomallei Oct-33 [CSKC]
83085
83160
+
Thr
CGT
[ENA]
¡û
>W1510534876
CSLJ01000002
Betaproteobacteria
Burkholderia pseudomallei P169/04 [CSLJ]
199214
199289
+
Thr
CGT
[ENA]
¡û
>W1510537589
CSNM01000009
Betaproteobacteria
Burkholderia pseudomallei C68 [CSNM]
83308
83383
+
Thr
CGT
[ENA]
¡û
>W1510539299
CSOW01000009
Betaproteobacteria
Burkholderia pseudomallei C58 [CSOW]
204673
204598
-
Thr
CGT
[ENA]
¡û
>W1510539350
CSOX01000007
Betaproteobacteria
Burkholderia pseudomallei C25 [CSOX]
83302
83377
+
Thr
CGT
[ENA]
¡û
>W1510668782
CWJF01000002
Betaproteobacteria
Burkholderia pseudomallei 147 [CWJF]
199212
199287
+
Thr
CGT
[ENA]
¡û
>W1511300512
JPHB01000023
Betaproteobacteria
Burkholderia pseudomallei PFGE_B T6 [JPHB]
488274
488349
+
Thr
CGT
[ENA]
¡û
>W1511308057
JPOA01000003
Betaproteobacteria
Burkholderia pseudomallei MSHR4304 [JPOA]
3530208
3530283
+
Thr
CGT
[ENA]
¡û
>W1511315365
JPVC01000006
Betaproteobacteria
Burkholderia pseudomallei MSHR4299 [JPVC]
1503898
1503973
+
Thr
CGT
[ENA]
¡û
>W1511315915
JPVL01000013
Betaproteobacteria
Burkholderia pseudomallei MSHR4000 [JPVL]
535237
535162
-
Thr
CGT
[ENA]
¡û
>W1511323207
JQEH01000056
Betaproteobacteria
Burkholderia pseudomallei MSHR3016 [JQEH]
251381
251456
+
Thr
CGT
[ENA]
¡û
>W1511324888
JQFN01000070
Betaproteobacteria
Burkholderia pseudomallei MSHR456 [JQFN]
18496
18571
+
Thr
CGT
[ENA]
¡û
>W1511326835
JQHR01000077
Betaproteobacteria
Burkholderia pseudomallei A79D [JQHR]
13958
13883
-
Thr
CGT
[ENA]
¡û
>W133001139
AMXD01000068
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
17171
17246
+
Thr
CGT
[ENA]
¡û
>W133001141
AMXF01000028
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
30616
30691
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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