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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235498 (11 seq.)
>WENV170347491
CETG01140249
[CETG] marine metagenome genome assembly TARA_122_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
535
460
-
Thr
TGT
[ENA]
¢þ
>W09133460
ACPD01000003
Bacillota
Clostridium cellulovorans 743B [ACPD]
150863
150788
-
Thr
TGT
[ENA]
¡û
>W09133462
ACPD01000007
Bacillota
Clostridium cellulovorans 743B [ACPD]
41908
41833
-
Thr
TGT
[ENA]
¡û
>C151101509
HG917868
Bacillota
Clostridium bornimense type strain: M2/40 [HG917868, HG917869]
2886679
2886604
-
Thr
TGT
[Ensembl]
¡û
>C151101519
HG917868
Bacillota
Clostridium bornimense type strain: M2/40 [HG917868, HG917869]
2483488
2483413
-
Thr
TGT
[Ensembl]
¡û
>C151101521
HG917868
Bacillota
Clostridium bornimense type strain: M2/40 [HG917868, HG917869]
2483282
2483207
-
Thr
TGT
[Ensembl]
¡û
>C10102795
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
5225892
5225817
-
Thr
TGT
[Ensembl]
¡û
>C10102811
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
3737472
3737397
-
Thr
TGT
[Ensembl]
¡û
>W11184306
BABR01000071
Bacillota
Clostridium cellulovorans 743B [BABR]
39727
39652
-
Thr
TGT
[ENA]
¡û
>W11184315
BABR01000312
Bacillota
Clostridium cellulovorans 743B [BABR]
42096
42021
-
Thr
TGT
[ENA]
¡û
>W11184317
BABR01000312
Bacillota
Clostridium cellulovorans 743B [BABR]
41911
41836
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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