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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23556 (34 seq.)
>W1710893649
LNEZ01000006
Alphaproteobacteria
Rhizobiales bacterium Ga0077548 [LNEZ]
16069
15980
-
Ser
TGA
[ENA]
¡û
>C010036
CP000009
Alphaproteobacteria
Gluconobacter oxydans 621H [CP000009]
213646
213735
+
Ser
TGA
[Ensembl]
¡û
>W141195252
AYTY01000088
Alphaproteobacteria
Gluconobacter oxydans DSM 2003 [AYTY]
8423
8334
-
Ser
TGA
[ENA]
¡û
>WENV170709533
LNFM01000440
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
73508
73597
+
Ser
TGA
[ENA]
¢þ
>WENV170713472
LNFM01032514
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
745
656
-
Ser
TGA
[ENA]
¢þ
>C181221184
LT900338
Alphaproteobacteria
Gluconobacter oxydans 621H [LT900338]
213649
213738
+
Ser
TGA
-
¡û
>C191090635
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
311964
312053
+
Ser
TGA
-
¡û
>C191157850
CP038143
Alphaproteobacteria
Oecophyllibacter saccharovorans Ha5 [CP038143]
276781
276870
+
Ser
TGA
-
¡û
>W1910181383
BJLY01000002
Alphaproteobacteria
Gluconobacter roseus NBRC 3990 [BJLY]
690409
690498
+
Ser
TGA
[ENA]
¡û
>W1910181766
BJMI01000001
Alphaproteobacteria
Gluconacetobacter liquefaciens NBRC 12388 [BJMI]
286985
286896
-
Ser
TGA
[ENA]
¡û
>W1910181882
BJMK01000013
Alphaproteobacteria
Gluconobacter sphaericus NBRC 12467 [BJMK]
12947
12858
-
Ser
TGA
[ENA]
¡û
>W1910183177
BJNM01000010
Alphaproteobacteria
Gluconobacter oxydans NBRC 14819 [BJNM]
8370
8281
-
Ser
TGA
[ENA]
¡û
>W1810763136
QQAW01000002
Alphaproteobacteria
Gluconacetobacter liquefaciens DSM 5603 [QQAW]
396876
396787
-
Ser
TGA
[ENA]
¡û
>C151006174
CP004373
Alphaproteobacteria
Gluconobacter oxydans DSM 3504 [CP004373]
239974
240063
+
Ser
TGA
[Ensembl]
¡û
>W121016316
AGQV01000002
Alphaproteobacteria
Gluconobacter morbifer G707 [AGQV]
421454
421543
+
Ser
TGA
[ENA]
¡û
>W1610040657
BALE01000016
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
24763
24852
+
Ser
TGA
[ENA]
¡û
>W1610076842
BCZB01000004
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
14546
14457
-
Ser
TGA
[ENA]
¡û
>W1610623989
LHZB01000088
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
14624
14713
+
Ser
TGA
[ENA]
¡û
>W1610624118
LHZD01000013
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
108518
108607
+
Ser
TGA
[ENA]
¡û
>W1610624199
LHZE01000086
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
8389
8300
-
Ser
TGA
[ENA]
¡û
>W1610624272
LHZG01000170
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
59308
59397
+
Ser
TGA
[ENA]
¡û
>W1610624497
LHZL01000158
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
8362
8273
-
Ser
TGA
[ENA]
¡û
>W1610624691
LHZP01000028
Alphaproteobacteria
Gluconobacter roseus [LHZP]
43050
42961
-
Ser
TGA
[ENA]
¡û
>W1610624996
LHZW01000052
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
2638
2549
-
Ser
TGA
[ENA]
¡û
>W1610753915
LNEZ01000006
Alphaproteobacteria
Rhizobiales bacterium Ga0077548 [LNEZ]
16069
15980
-
Ser
TGA
[ENA]
¡û
>W1710037855
BALE01000016
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
24763
24852
+
Ser
TGA
[ENA]
¡û
>W1710074531
BCZB01000004
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
14546
14457
-
Ser
TGA
[ENA]
¡û
>W1710755107
LHZB01000088
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
14624
14713
+
Ser
TGA
[ENA]
¡û
>W1710755236
LHZD01000013
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
108518
108607
+
Ser
TGA
[ENA]
¡û
>W1710755317
LHZE01000086
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
8389
8300
-
Ser
TGA
[ENA]
¡û
>W1710755390
LHZG01000170
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
59308
59397
+
Ser
TGA
[ENA]
¡û
>W1710755615
LHZL01000158
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
8362
8273
-
Ser
TGA
[ENA]
¡û
>W1710755809
LHZP01000028
Alphaproteobacteria
Gluconobacter roseus [LHZP]
43050
42961
-
Ser
TGA
[ENA]
¡û
>W1710756114
LHZW01000052
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
2638
2549
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK