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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235582 (29 seq.)
>C171046489
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
3767959
3768034
+
Lys
TTT
-
¡û
>WENV180019780
FTCO01000293
[FTCO] metagenome; soil
6
81
+
Lys
TTT
[ENA]
¢þ
>WENV180029143
FTJI01072180
[FTJI] metagenome; soil
1140
1067
-
Lys
TTT
[ENA]
¢þ
>WENV180034664
FTKR01073397
[FTKR] metagenome; soil
1140
1067
-
Lys
TTT
[ENA]
¢þ
>W141073120
ASRX01000027
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
18194
18269
+
Lys
TTT
[ENA]
¡û
>C08008918
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
4359245
4359320
+
Lys
TTT
[Ensembl]
¡û
>WENV170634860
JAHE01100597
[JAHE] sediment metagenome; lake sediment
111
186
+
Lys
TTT
[ENA]
¢þ
>WENV170653795
JRYJ01106768
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
121
196
+
Lys
TTT
[ENA]
¢þ
>C181012487
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
4902135
4902208
+
Lys
TTT
-
¡û
>C191010042
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
3785289
3785214
-
Lys
TTT
-
¡û
>C191010068
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
5444259
5444334
+
Lys
TTT
-
¡û
>C151091973
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
6328296
6328371
+
Lys
TTT
-
¡û
>W1610048980
BBEO01002874
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
695
620
-
Lys
TTT
[ENA]
¡û
>C131010752
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
5429774
5429849
+
Lys
TTT
[Ensembl]
¡û
>W1610520460
JELY01003724
Myxococcota
Sorangium cellulosum [JELY]
95
168
+
Lys
TTT
[ENA]
¡û
>W1610520487
JELZ01001744
Myxococcota
Sorangium cellulosum [JELZ]
174
247
+
Lys
TTT
[ENA]
¡û
>W1610520523
JEMA01000372
Myxococcota
Sorangium cellulosum [JEMA]
4572
4647
+
Lys
TTT
[ENA]
¡û
>W1610520560
JEMB01000695
Myxococcota
Sorangium cellulosum [JEMB]
208
281
+
Lys
TTT
[ENA]
¡û
>W1610520650
JEMC01003308
Myxococcota
Sorangium cellulosum [JEMC]
8140
8067
-
Lys
TTT
[ENA]
¡û
>W1610520700
JEMD01001943
Myxococcota
Sorangium cellulosum [JEMD]
54261
54188
-
Lys
TTT
[ENA]
¡û
>W1610520745
JEME01002231
Myxococcota
Sorangium cellulosum [JEME]
235
308
+
Lys
TTT
[ENA]
¡û
>W1710045452
BBEO01002874
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
695
620
-
Lys
TTT
[ENA]
¡û
>W1710615938
JELY01003724
Myxococcota
Sorangium cellulosum [JELY]
95
168
+
Lys
TTT
[ENA]
¡û
>W1710615965
JELZ01001744
Myxococcota
Sorangium cellulosum [JELZ]
174
247
+
Lys
TTT
[ENA]
¡û
>W1710616001
JEMA01000372
Myxococcota
Sorangium cellulosum [JEMA]
4572
4647
+
Lys
TTT
[ENA]
¡û
>W1710616038
JEMB01000695
Myxococcota
Sorangium cellulosum [JEMB]
208
281
+
Lys
TTT
[ENA]
¡û
>W1710616128
JEMC01003308
Myxococcota
Sorangium cellulosum [JEMC]
8140
8067
-
Lys
TTT
[ENA]
¡û
>W1710616178
JEMD01001943
Myxococcota
Sorangium cellulosum [JEMD]
54261
54188
-
Lys
TTT
[ENA]
¡û
>W1710616223
JEME01002231
Myxococcota
Sorangium cellulosum [JEME]
235
308
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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