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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235595 (32 seq.)
>C171046538
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
12817528
12817603
+
Gly
TCC
-
¡û
>WENV180029283
FTJI01383514
[FTJI] metagenome; soil
119
192
+
Gly
TCC
[ENA]
¢þ
>WENV180034809
FTKR01402968
[FTKR] metagenome; soil
119
192
+
Gly
TCC
[ENA]
¢þ
>WENV180035409
FTKV01000035
[FTKV] metagenome; soil
273
200
-
Gly
TCC
[ENA]
¢þ
>W141073146
ASRX01000083
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
1414
1339
-
Gly
TCC
[ENA]
¡û
>C08008908
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
581385
581460
+
Gly
TCC
[Ensembl]
¡û
>WENV170470143
CEVF01162078
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
29
104
+
Gly
TCC
[ENA]
¢þ
>WENV170925952
MDTG01092635
[MDTG] marine metagenome; seawater
17803
17728
-
Gly
TCC
[ENA]
¢þ
>C181012478
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
858113
858186
+
Gly
TCC
-
¡û
>C191010007
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
615339
615414
+
Gly
TCC
-
¡û
>C191010057
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
859210
859284
+
Gly
TCC
-
¡û
>C151077669
CP011125
Myxococcota
Sandaracinus amylolyticus DSM 53668 [CP011125]
3146061
3145988
-
Gly
TCC
[Ensembl]
¡û
>C151091963
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
2022290
2022365
+
Gly
TCC
-
¡û
>W1610048977
BBEO01002228
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
782
857
+
Gly
TCC
[ENA]
¡û
>C131010741
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
804401
804476
+
Gly
TCC
[Ensembl]
¡û
>W1610520367
JELX01000311
Myxococcota
Sorangium cellulosum [JELX]
248
173
-
Gly
TCC
[ENA]
¡û
>W1610520433
JELY01001621
Myxococcota
Sorangium cellulosum [JELY]
469
396
-
Gly
TCC
[ENA]
¡û
>W1610520465
JELZ01000251
Myxococcota
Sorangium cellulosum [JELZ]
248
175
-
Gly
TCC
[ENA]
¡û
>W1610520533
JEMA01000712
Myxococcota
Sorangium cellulosum [JEMA]
3768
3841
+
Gly
TCC
[ENA]
¡û
>W1610520572
JEMB01001265
Myxococcota
Sorangium cellulosum [JEMB]
3809
3882
+
Gly
TCC
[ENA]
¡û
>W1610520636
JEMC01002495
Myxococcota
Sorangium cellulosum [JEMC]
669
744
+
Gly
TCC
[ENA]
¡û
>W1610520672
JEMD01001331
Myxococcota
Sorangium cellulosum [JEMD]
4044
4119
+
Gly
TCC
[ENA]
¡û
>W1610520727
JEME01001211
Myxococcota
Sorangium cellulosum [JEME]
3959
4034
+
Gly
TCC
[ENA]
¡û
>W1710045449
BBEO01002228
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
782
857
+
Gly
TCC
[ENA]
¡û
>W1710615845
JELX01000311
Myxococcota
Sorangium cellulosum [JELX]
248
173
-
Gly
TCC
[ENA]
¡û
>W1710615911
JELY01001621
Myxococcota
Sorangium cellulosum [JELY]
469
396
-
Gly
TCC
[ENA]
¡û
>W1710615943
JELZ01000251
Myxococcota
Sorangium cellulosum [JELZ]
248
175
-
Gly
TCC
[ENA]
¡û
>W1710616011
JEMA01000712
Myxococcota
Sorangium cellulosum [JEMA]
3768
3841
+
Gly
TCC
[ENA]
¡û
>W1710616050
JEMB01001265
Myxococcota
Sorangium cellulosum [JEMB]
3809
3882
+
Gly
TCC
[ENA]
¡û
>W1710616114
JEMC01002495
Myxococcota
Sorangium cellulosum [JEMC]
669
744
+
Gly
TCC
[ENA]
¡û
>W1710616150
JEMD01001331
Myxococcota
Sorangium cellulosum [JEMD]
4044
4119
+
Gly
TCC
[ENA]
¡û
>W1710616205
JEME01001211
Myxococcota
Sorangium cellulosum [JEME]
3959
4034
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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