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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235604 (7 seq.)
>WENV180281754
OBIA01103009
[OBIA] human gut metagenome; human gut
140
215
+
Asp
GTC
[ENA]
¡û
>WENV180810953
ODJM01005011
[ODJM] human metagenome; G_DNA_Buccal mucosa
494
569
+
Asp
GTC
[ENA]
¡û
>WENV180858827
ODLC01037900
[ODLC] human metagenome; G_DNA_Tongue dorsum
218
143
-
Asp
GTC
[ENA]
¡û
>WENV181020964
ODWV01001036
[ODWV] human metagenome; G_DNA_Tongue dorsum
6520
6445
-
Asp
GTC
[ENA]
¡û
>WENV181043865
ODXV01001161
[ODXV] human metagenome; G_DNA_Tongue dorsum
4952
4877
-
Asp
GTC
[ENA]
¡û
>WENV181045195
ODXW01000021
[ODXW] human metagenome; G_DNA_Tongue dorsum
74188
74263
+
Asp
GTC
[ENA]
¡û
>WENV181175477
OEJQ01002437
[OEJQ] human metagenome; G_DNA_Tongue dorsum
1414
1489
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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