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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235625 (50 seq.)
>W1711343474
MCIJ01000001
Actinomycetota
Pseudonocardia sp. Ae150A_Ps1 [MCIJ]
4395449
4395524
+
Ala
GGC
[ENA]
¡û
>W1711343526
MCIK01000001
Actinomycetota
Pseudonocardia sp. Ae168_Ps1 [MCIK]
4398448
4398523
+
Ala
GGC
[ENA]
¡û
>W1711343602
MCIL01000001
Actinomycetota
Pseudonocardia sp. Ae263_Ps1 [MCIL]
1073406
1073331
-
Ala
GGC
[ENA]
¡û
>W1711343626
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
3256690
3256765
+
Ala
GGC
[ENA]
¡û
>W1711343696
MCIN01000001
Actinomycetota
Pseudonocardia sp. Ae356_Ps1 [MCIN]
6035923
6035998
+
Ala
GGC
[ENA]
¡û
>W1711343773
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
2817735
2817660
-
Ala
GGC
[ENA]
¡û
>W1711343790
MCIP01000001
Actinomycetota
Pseudonocardia sp. Ae505_Ps2 [MCIP]
2660525
2660600
+
Ala
GGC
[ENA]
¡û
>W1711343881
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
2836140
2836065
-
Ala
GGC
[ENA]
¡û
>W1711343896
MCIR01000001
Actinomycetota
Pseudonocardia sp. Ae707_Ps1 [MCIR]
985345
985420
+
Ala
GGC
[ENA]
¡û
>W1711343944
MCIS01000001
Actinomycetota
Pseudonocardia sp. Ae717_Ps2 [MCIS]
752269
752344
+
Ala
GGC
[ENA]
¡û
>W1711386143
MEEZ01000003
Actinomycetota
Pseudonocardia sp. SCN 72-51 [MEEZ]
15225
15297
+
Ala
GGC
[ENA]
¡û
>W1711386209
MEFA01000213
Actinomycetota
Pseudonocardia sp. SCN 72-86 [MEFA]
6566
6491
-
Ala
GGC
[ENA]
¡û
>W1711387112
MEGH01000005
Actinomycetota
Pseudonocardia sp. SCN 73-27 [MEGH]
209552
209477
-
Ala
GGC
[ENA]
¡û
>W1711427807
MIFY01000029
Actinomycetota
Pseudonocardia autotrophica [MIFY]
105337
105412
+
Ala
GGC
[ENA]
¡û
>W1711427943
MIGB01000005
Actinomycetota
Pseudonocardia autotrophica [MIGB]
270659
270734
+
Ala
GGC
[ENA]
¡û
>W1711491753
MKJV01000079
Actinomycetota
Pseudonocardia sp. CNS-004 [MKJV]
1805
1730
-
Ala
GGC
[ENA]
¡û
>W1711491821
MKJX01000011
Actinomycetota
Pseudonocardia sp. CNS-139 [MKJX]
92174
92249
+
Ala
GGC
[ENA]
¡û
>W131231264
AUII01000010
Actinomycetota
Pseudonocardia asaccharolytica DSM 44247 [AUII]
58651
58576
-
Ala
GGC
[ENA]
¡û
>WENV180291108
OBIV01006847
[OBIV] soil metagenome; Clay
743
816
+
Ala
GGC
[ENA]
¢þ
>WENV180343268
OBLK01000965
[OBLK] soil metagenome; Clay
1343
1270
-
Ala
GGC
[ENA]
¢þ
>W141094385
AVCN01000019
Actinomycetota
Saccharopolyspora erythraea D [AVCN]
52020
51945
-
Ala
GGC
[ENA]
¡û
>WENV181297843
OFHL01000416
[OFHL] soil metagenome; Clay
4894
4967
+
Ala
GGC
[ENA]
¢þ
>WENV181597744
OGKZ01019649
[OGKZ] metagenome; Human gut stool
7
80
+
Ala
GGC
[ENA]
¢þ
>WENV181634630
OGMW01008250
[OGMW] metagenome; Human gut stool
2863
2790
-
Ala
GGC
[ENA]
¢þ
>C191005727
AP018920
Actinomycetota
Pseudonocardia autotrophica NBRC 12743 [AP018920]
1298658
1298732
+
Ala
GGC
-
¡û
>W141757762
JNYD01000005
Actinomycetota
Pseudonocardia autotrophica [JNYD]
27492
27417
-
Ala
GGC
[ENA]
¡û
>W1910038403
BEGX01000001
Actinomycetota
Pseudonocardia sp. N23 [BEGX]
78962
79036
+
Ala
GGC
[ENA]
¡û
>W1910182871
BJNG01000007
Actinomycetota
Pseudonocardia hydrocarbonoxydans NBRC 14498 [BJNG]
31428
31502
+
Ala
GGC
[ENA]
¡û
>W1910182966
BJNH01000163
Actinomycetota
Pseudonocardia saturnea NBRC 14499 [BJNH]
3125
3199
+
Ala
GGC
[ENA]
¡û
>W1910994833
NKYF01000001
Actinomycetota
Pseudonocardia sp. MH-G8 [NKYF]
790481
790407
-
Ala
GGC
[ENA]
¡û
>W1810121470
PHUJ01000003
Actinomycetota
Pseudonocardia alni DSM 44104 [PHUJ]
4393580
4393654
+
Ala
GGC
[ENA]
¡û
>W1810176389
PJPW02000042
Actinomycetota
Pseudonocardia dioxanivorans BERK-1 [PJPW]
9690
9764
+
Ala
GGC
[ENA]
¡û
>W1810504347
QBKV01000002
Actinomycetota
Saccharopolyspora hirsuta DSM 44795 [QBKV]
1310921
1310994
+
Ala
GGC
[ENA]
¡û
>C151075013
CP010989
Actinomycetota
Pseudonocardia sp. EC080625-04 [CP010989]
4607706
4607631
-
Ala
GGC
-
¡û
>C151087152
CP011862
Actinomycetota
Pseudonocardia sp. AL041005-10 [CP011862]
4650863
4650938
+
Ala
GGC
-
¡û
>C151087208
CP011868
Actinomycetota
Pseudonocardia sp. HH130629-09 [CP011868]
4282969
4282894
-
Ala
GGC
-
¡û
>W10100226
ABFV01000030
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [ABFV]
17329
17254
-
Ala
GGC
[ENA]
¡û
>W10118408
ADUJ01000335
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
18077
18002
-
Ala
GGC
[ENA]
¡û
>W10128148
AEGE01001003
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
14037
14112
+
Ala
GGC
[ENA]
¡û
>W11100226
ABFV01000030
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [ABFV]
17329
17254
-
Ala
GGC
[ENA]
¡û
>C11117072
CP002593
Actinomycetota
Pseudonocardia dioxanivorans CB1190 [CP002593]
1272434
1272509
+
Ala
GGC
[Ensembl]
¡û
>W11123483
ADUJ01000335
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
18077
18002
-
Ala
GGC
[ENA]
¡û
>W11136846
AEGE01001003
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
14037
14112
+
Ala
GGC
[ENA]
¡û
>C161040371
CP012181
Actinomycetota
Pseudonocardia sp. EC080610-09 [CP012181]
97157
97082
-
Ala
GGC
-
¡û
>C161040419
CP012184
Actinomycetota
Pseudonocardia sp. EC080619-01 [CP012184]
1803423
1803348
-
Ala
GGC
[Ensembl]
¡û
>C161061320
CP013854
Actinomycetota
Pseudonocardia sp. HH130630-07 [CP013854]
1168255
1168180
-
Ala
GGC
[Ensembl]
¡û
>W1710514723
FNBE01000008
Actinomycetota
Pseudonocardia oroxyli [FNBE]
245212
245287
+
Ala
GGC
[ENA]
¡û
>W1710539092
FNVB01000005
Actinomycetota
Saccharopolyspora kobensis hirsuta [FNVB]
207569
207496
-
Ala
GGC
[ENA]
¡û
>W1710558800
FOME01000002
Actinomycetota
Saccharopolyspora kobensis jiangxiensis [FOME]
207447
207374
-
Ala
GGC
[ENA]
¡û
>W1710570132
FOUY01000005
Actinomycetota
Pseudonocardia ammonioxydans [FOUY]
4644
4569
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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