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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235636 (30 seq.)
>W1711434405
MIMZ01000006
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
21000
20925
-
His
GTG
[ENA]
¡û
>C171101787
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2651452
2651527
+
His
GTG
-
¡û
>WENV180176840
OAWD01002138
[OAWD] human gut metagenome; faeces
2191
2116
-
His
GTG
[ENA]
¢þ
>WENV180498549
OCAG01000396
[OCAG] human gut metagenome; faeces
2182
2107
-
His
GTG
[ENA]
¢þ
>WENV180504423
OCAN01002669
[OCAN] human gut metagenome; faeces
4360
4435
+
His
GTG
[ENA]
¢þ
>WENV180663808
OCVV011134453
[OCVV] gut metagenome; gut
331
406
+
His
GTG
[ENA]
¢þ
>WENV180663812
OCVV011134453
[OCVV] gut metagenome; gut
331
406
+
His
GTG
[ENA]
¢þ
>WENV182403351
OIET01003179
[OIET] human gut metagenome; human gut
404
329
-
His
GTG
[ENA]
¢þ
>WENV182405347
OIEV01003345
[OIEV] human gut metagenome; human gut
3460
3535
+
His
GTG
[ENA]
¢þ
>WENV182817064
OJZH01008980
[OJZH] human gut metagenome; human gut
41
116
+
His
GTG
[ENA]
¢þ
>WENV182836555
OKFX01005194
[OKFX] human gut metagenome; human gut
433
508
+
His
GTG
[ENA]
¢þ
>C181047861
CP020953
Bacillota
Clostridium drakei SL1 [CP020953]
4905847
4905772
-
His
GTG
-
¡û
>C191064413
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3776518
3776593
+
His
GTG
-
¡û
>C191219488
LR215983
Bacillota
Eubacterium limosum [LR215983]
267502
267577
+
His
GTG
-
¡û
>W141565636
JIBU02000113
Bacillota
Clostridium drakei [JIBU]
366
291
-
His
GTG
[ENA]
¡û
>W141569606
JIDX01000159
Bacillota
Clostridium scatologenes [JIDX]
186
111
-
His
GTG
[ENA]
¡û
>W09135123
ACVI01000175
Bacillota
Clostridium carboxidivorans P7 [ACVI]
6639
6714
+
His
GTG
[ENA]
¡û
>W1810367416
PVXN01000053
Bacillota
Clostridium thermopalmarium DSM 5974 [PVXN]
263906
263981
+
His
GTG
[ENA]
¡û
>W1810609735
QGUD01000001
Bacillota
Eubacterium limosum 8486cho [QGUD]
21053
20978
-
His
GTG
[ENA]
¡û
>W1810871733
QUDF01000007
Bacillota
Eubacterium sp. AM05-23 [QUDF]
254186
254261
+
His
GTG
[ENA]
¡û
>C151086680
CP011803
Bacillota
Clostridium carboxidivorans P7 [CP011803]
4122576
4122501
-
His
GTG
[Ensembl]
¡û
>C11108806
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
923035
923110
+
His
GTG
[Ensembl]
¡û
>W11115408
ADEK01000002
Bacillota
Clostridium carboxidivorans P7 [ADEK]
107264
107339
+
His
GTG
[ENA]
¡û
>W1511480178
JWIS01000018
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
20911
20836
-
His
GTG
[ENA]
¡û
>C161037800
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3274377
3274302
-
His
GTG
[Ensembl]
¡û
>W1710525050
FNJF01000028
Bacillota
Eubacterium maltosivorans limosum [FNJF]
20802
20727
-
His
GTG
[ENA]
¡û
>W1710530499
FNOU01000002
Bacillota
Eubacterium barkeri [FNOU]
46071
45996
-
His
GTG
[ENA]
¡û
>W1710533803
FNRK01000010
Bacillota
Eubacterium aggregans [FNRK]
37233
37158
-
His
GTG
[ENA]
¡û
>W1710571957
FOWI01000001
Bacillota
Eubacterium callanderi [FOWI]
700984
701059
+
His
GTG
[ENA]
¡û
>W1710591299
FRBP01000009
Bacillota
Eubacterium callanderi [FRBP]
200075
200150
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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