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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235695 (34 seq.)
>W131052759
AMZI01000042
Bacillota
Pelosinus sp. HCF1 [AMZI]
16623
16548
-
Asp
GTC
[ENA]
¡û
>W131052768
AMZI01000044
Bacillota
Pelosinus sp. HCF1 [AMZI]
285
210
-
Asp
GTC
[ENA]
¡û
>W131052783
AMZI01000138
Bacillota
Pelosinus sp. HCF1 [AMZI]
85250
85175
-
Asp
GTC
[ENA]
¡û
>W131231451
AUIL01000054
Bacillota
Sporomusa ovata DSM 2662 [AUIL]
9876
9801
-
Asp
GTC
[ENA]
¡û
>WENV180315047
OBKH01008510
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
316
391
+
Asp
GTC
[ENA]
¢þ
>W141074107
ASXP01000007
Bacillota
Sporomusa ovata DSM 2662 [ASXP]
11416
11341
-
Asp
GTC
[ENA]
¡û
>WENV170660120
JXWT01003927
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
306
231
-
Asp
GTC
[ENA]
¢þ
>W1910639024
LSLK01000114
Bacillota
Sporomusa silvacetica DSM 10669 [LSLK]
86960
86885
-
Asp
GTC
[ENA]
¡û
>C151038524
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
1638127
1638202
+
Asp
GTC
[Ensembl]
¡û
>C151038530
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
1800909
1800984
+
Asp
GTC
[Ensembl]
¡û
>C151038534
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
1820688
1820763
+
Asp
GTC
[Ensembl]
¡û
>C151038548
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
4822758
4822833
+
Asp
GTC
[Ensembl]
¡û
>C151074852
CP010978
Bacillota
Pelosinus fermentans JBW45 [CP010978]
5325775
5325700
-
Asp
GTC
[Ensembl]
¡û
>C151074883
CP010978
Bacillota
Pelosinus fermentans JBW45 [CP010978]
3072915
3072840
-
Asp
GTC
[Ensembl]
¡û
>C151074886
CP010978
Bacillota
Pelosinus fermentans JBW45 [CP010978]
3068497
3068422
-
Asp
GTC
[Ensembl]
¡û
>W1510586096
CTRP01000013
Bacillota
Sporomusa ovata An4 [CTRP]
9732
9657
-
Asp
GTC
[ENA]
¡û
>W121101520
AKVJ01000029
Bacillota
Pelosinus fermentans B4 [AKVJ]
267608
267533
-
Asp
GTC
[ENA]
¡û
>W121101523
AKVJ01000029
Bacillota
Pelosinus fermentans B4 [AKVJ]
263191
263116
-
Asp
GTC
[ENA]
¡û
>W121101532
AKVJ01000030
Bacillota
Pelosinus fermentans B4 [AKVJ]
246186
246111
-
Asp
GTC
[ENA]
¡û
>W121101640
AKVM01000070
Bacillota
Pelosinus fermentans A11 [AKVM]
267609
267534
-
Asp
GTC
[ENA]
¡û
>W121101643
AKVM01000070
Bacillota
Pelosinus fermentans A11 [AKVM]
263192
263117
-
Asp
GTC
[ENA]
¡û
>W121101658
AKVM01000072
Bacillota
Pelosinus fermentans A11 [AKVM]
7752
7677
-
Asp
GTC
[ENA]
¡û
>W121101708
AKVN01000028
Bacillota
Pelosinus fermentans DSM 17108 [AKVN]
176815
176740
-
Asp
GTC
[ENA]
¡û
>W121101711
AKVN01000028
Bacillota
Pelosinus fermentans DSM 17108 [AKVN]
172398
172323
-
Asp
GTC
[ENA]
¡û
>W121101726
AKVN01000034
Bacillota
Pelosinus fermentans DSM 17108 [AKVN]
7752
7677
-
Asp
GTC
[ENA]
¡û
>W121101756
AKVO01000033
Bacillota
Pelosinus fermentans JBW45 [AKVO]
80820
80895
+
Asp
GTC
[ENA]
¡û
>W121101770
AKVO01000035
Bacillota
Pelosinus fermentans JBW45 [AKVO]
144191
144116
-
Asp
GTC
[ENA]
¡û
>W121101773
AKVO01000035
Bacillota
Pelosinus fermentans JBW45 [AKVO]
139773
139698
-
Asp
GTC
[ENA]
¡û
>W1710526315
FNKF01000002
Bacillota
Pelosinus fermentans [FNKF]
3007575
3007500
-
Asp
GTC
[ENA]
¡û
>W1710526318
FNKF01000002
Bacillota
Pelosinus fermentans [FNKF]
3003158
3003083
-
Asp
GTC
[ENA]
¡û
>W1710526334
FNKF01000002
Bacillota
Pelosinus fermentans [FNKF]
106841
106766
-
Asp
GTC
[ENA]
¡û
>W1710568582
FOTS01000025
Bacillota
Pelosinus propionicus DSM 13327 [FOTS]
61712
61637
-
Asp
GTC
[ENA]
¡û
>W1710568585
FOTS01000025
Bacillota
Pelosinus propionicus DSM 13327 [FOTS]
57157
57082
-
Asp
GTC
[ENA]
¡û
>W1710568606
FOTS01000064
Bacillota
Pelosinus propionicus DSM 13327 [FOTS]
24408
24333
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK