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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235701 (34 seq.)
>WENV180004359
FLRS01000459
[FLRS] metagenome; saliva
724
800
+
Lys
TTT
[ENA]
¡û
>WENV180008183
FLSB01004844
[FLSB] metagenome; saliva
148
224
+
Lys
TTT
[ENA]
¡û
>WENV180008189
FLSB01005158
[FLSB] metagenome; saliva
858
782
-
Lys
TTT
[ENA]
¡û
>WENV180011708
FLSK01026418
[FLSK] metagenome; saliva
1148
1224
+
Lys
TTT
[ENA]
¡û
>WENV180225819
OBBP01000137
[OBBP] human oral metagenome; human oral
1151
1227
+
Lys
TTT
[ENA]
¡û
>WENV180782465
ODIQ01000021
[ODIQ] human metagenome; G_DNA_Tongue dorsum
126347
126271
-
Lys
TTT
[ENA]
¡û
>WENV180807805
ODJI01011274
[ODJI] human metagenome; G_DNA_Tongue dorsum
687
611
-
Lys
TTT
[ENA]
¡û
>WENV180845689
ODKT01001574
[ODKT] human metagenome; G_DNA_Supragingival plaque
9588
9664
+
Lys
TTT
[ENA]
¡û
>WENV180853638
ODKX01000010
[ODKX] human metagenome; G_DNA_Tongue dorsum
20924
21000
+
Lys
TTT
[ENA]
¡û
>WENV180857803
ODLC01000046
[ODLC] human metagenome; G_DNA_Tongue dorsum
11468
11544
+
Lys
TTT
[ENA]
¡û
>WENV180865774
ODLJ01000634
[ODLJ] human metagenome; G_DNA_Tongue dorsum
3631
3555
-
Lys
TTT
[ENA]
¡û
>WENV180865824
ODLJ01000904
[ODLJ] human metagenome; G_DNA_Tongue dorsum
5023
4947
-
Lys
TTT
[ENA]
¡û
>WENV180929088
ODTN01000486
[ODTN] human metagenome; G_DNA_Tongue dorsum
4631
4707
+
Lys
TTT
[ENA]
¡û
>WENV180954702
ODUJ01007010
[ODUJ] human metagenome; G_DNA_Tongue dorsum
883
807
-
Lys
TTT
[ENA]
¡û
>WENV180974748
ODUX01086872
[ODUX] human metagenome; G_DNA_Buccal mucosa
141
65
-
Lys
TTT
[ENA]
¡û
>WENV180977202
ODUZ01000078
[ODUZ] human metagenome; G_DNA_Tongue dorsum
35000
34924
-
Lys
TTT
[ENA]
¡û
>WENV181011099
ODWI01005091
[ODWI] human metagenome; G_DNA_Tongue dorsum
1417
1341
-
Lys
TTT
[ENA]
¡û
>WENV181104037
OECV01028103
[OECV] human metagenome; G_DNA_Throat
1
77
+
Lys
TTT
[ENA]
¡û
>WENV181150114
OEHW01000492
[OEHW] human metagenome; G_DNA_Tongue dorsum
13665
13741
+
Lys
TTT
[ENA]
¡û
>WENV181150345
OEHW01001646
[OEHW] human metagenome; G_DNA_Tongue dorsum
823
899
+
Lys
TTT
[ENA]
¡û
>WENV181157299
OEIG01001709
[OEIG] human metagenome; G_DNA_Hard palate
2874
2798
-
Lys
TTT
[ENA]
¡û
>WENV181919789
OGYI01002959
[OGYI] human gut metagenome; faeces
9977
9901
-
Lys
TTT
[ENA]
¡û
>WENV181980694
OHAF01107882
[OHAF] human gut metagenome; faeces
357
433
+
Lys
TTT
[ENA]
¡û
>WENV182891968
OKSH01009244
[OKSH] human gut metagenome; faeces
1480
1556
+
Lys
TTT
[ENA]
¡û
>WENV183242215
OLRB01007629
[OLRB] human gut metagenome; faeces
1439
1515
+
Lys
TTT
[ENA]
¡û
>WENV183706454
PDWI01004297
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
19046
19122
+
Lys
TTT
[ENA]
¡û
>WENV183708259
PDWI01014124
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6239
6315
+
Lys
TTT
[ENA]
¡û
>WENV183708854
PDWI01020548
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6368
6444
+
Lys
TTT
[ENA]
¡û
>WENV183713332
PDWI01134562
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1031
955
-
Lys
TTT
[ENA]
¡û
>WENV183713686
PDWI01149142
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
315
239
-
Lys
TTT
[ENA]
¡û
>W2010362356
CADDWL010000139
Unclassified
Candidatus Saccharibacteria bacterium [CADDWL]
1032
956
-
Lys
TTT
[ENA]
¡û
>W2011551688
SDRP01000033
Unclassified
TM7 phylum sp. oral taxon 352 TM7_HOT_352-SAG4 [SDRP]
3717
3641
-
Lys
TTT
[ENA]
¡û
>W2011552053
SDSB01000001
Unclassified
TM7 phylum sp. oral taxon 352 TM7_HOT_352-SAG5 [SDSB]
13732
13656
-
Lys
TTT
[ENA]
¡û
>C231663695
OX335598
Unclassified
Candidatus Saccharibacteria bacterium [OX335598]
542444
542368
-
Lys
TTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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