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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235770 (17 seq.)
>W1710876546
LMPI01000001
Actinomycetota
Microbacterium sp. Leaf347 [LMPI]
305562
305489
-
Arg
TCT
[ENA]
¡û
>W1710876647
LMPK01000033
Actinomycetota
Microbacterium sp. Leaf351 [LMPK]
62195
62268
+
Arg
TCT
[ENA]
¡û
>W1711386947
MEGA01000038
Actinomycetota
Microbacterium sp. SCN 71-21 [MEGA]
2486
2559
+
Arg
TCT
[ENA]
¡û
>W1711502210
MKSL01000017
Actinomycetota
Microbacterium sp. 71-23 [MKSL]
240874
240947
+
Arg
TCT
[ENA]
¡û
>C014026
CP000480
Actinomycetota
Mycolicibacterium smegmatis MC2 155 [CP000480]
4797480
4797552
+
Arg
TCT
[Ensembl]
¡û
>W141283025
JAJD01000116
Actinomycetota
Mycolicibacterium smegmatis MC2 51 [JAJD]
112577
112650
+
Arg
TCT
[ENA]
¡û
>WENV170223576
CEQD01216641
[CEQD] marine metagenome genome assembly TARA_042_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
247
174
-
Arg
TCT
[ENA]
¢þ
>WENV170840040
MDSZ01197125
[MDSZ] marine metagenome; seawater
6130
6057
-
Arg
TCT
[ENA]
¢þ
>C151052870
CP009494
Actinomycetota
Mycolicibacterium smegmatis MC2 155 [CP009494]
4797526
4797599
+
Arg
TCT
[Ensembl]
¡û
>C151052917
CP009495
Actinomycetota
Mycolicibacterium smegmatis INHR1 [CP009495]
4797564
4797637
+
Arg
TCT
[Ensembl]
¡û
>C151052964
CP009496
Actinomycetota
Mycolicibacterium smegmatis INHR2 [CP009496]
4797552
4797625
+
Arg
TCT
[Ensembl]
¡û
>C151091782
CP012150
Actinomycetota
Mycobacterium goodii X7B [CP012150]
3605396
3605323
-
Arg
TCT
-
¡û
>W1511528904
JYIY01000079
Actinomycetota
Microbacterium ginsengisoli DSM 18659 [JYIY]
56234
56161
-
Arg
TCT
[ENA]
¡û
>C121001618
CP001663
Actinomycetota
Mycolicibacterium smegmatis MC2 155 [CP001663]
4799092
4799165
+
Arg
TCT
-
¡û
>C161106283
LN831039
Actinomycetota
Mycolicibacterium smegmatis NCTC8159 [LN831039]
4808200
4808273
+
Arg
TCT
[Ensembl]
¡û
>W1610738892
LMPI01000001
Actinomycetota
Microbacterium sp. Leaf347 [LMPI]
305562
305489
-
Arg
TCT
[ENA]
¡û
>W1610738993
LMPK01000033
Actinomycetota
Microbacterium sp. Leaf351 [LMPK]
62195
62268
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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