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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235818 (34 seq.)
>W131223152
AUBV01000016
Bacteroidota
Algoriphagus mannitolivorans DSM 15301 [AUBV]
65072
64999
-
Lys
TTT
[ENA]
¡û
>W131223155
AUBV01000016
Bacteroidota
Algoriphagus mannitolivorans DSM 15301 [AUBV]
64607
64532
-
Lys
TTT
[ENA]
¡û
>W131169821
ARFA01000024
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
112356
112431
+
Lys
TTT
[ENA]
¡û
>W131167752
ARDN01000002
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
56970
57045
+
Lys
TTT
[ENA]
¡û
>W131167755
ARDN01000002
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
57349
57422
+
Lys
TTT
[ENA]
¡û
>W131167756
ARDN01000002
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
57592
57667
+
Lys
TTT
[ENA]
¡û
>WENV180259319
OBEQ011091194
[OBEQ] groundwater metagenome; groundwater
1416
1489
+
Lys
TTT
[ENA]
¢þ
>WENV180594148
OCOY01063472
[OCOY] marine metagenome; ENVO:00002010
275
350
+
Lys
TTT
[ENA]
¢þ
>WENV181377240
OFRA01005067
[OFRA] wastewater metagenome; Lake Maggiore Verbania
232
159
-
Lys
TTT
[ENA]
¢þ
>WENV181839160
OGVN01078057
[OGVN] freshwater metagenome; freshwater
291
364
+
Lys
TTT
[ENA]
¢þ
>WENV183732900
PJTX01034700
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
147
73
-
Lys
TTT
[ENA]
¢þ
>WENV170990045
MWVZ01191308
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
145
220
+
Lys
TTT
[ENA]
¢þ
>WENV170990991
MWWA01087841
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
464
391
-
Lys
TTT
[ENA]
¢þ
>WENV170991849
MWWA01347442
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
128
203
+
Lys
TTT
[ENA]
¢þ
>WENV170994922
MWWE01088216
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
265
192
-
Lys
TTT
[ENA]
¢þ
>WENV170995075
MWWE01145593
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
368
293
-
Lys
TTT
[ENA]
¢þ
>C181069073
CP022585
Bacteroidota
Candidatus Fluviicola riflensis [CP022585]
1506445
1506370
-
Lys
TTT
-
¡û
>W1910547402
FZNS01000004
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
385298
385225
-
Lys
TTT
[ENA]
¡û
>W1910547403
FZNS01000004
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
384335
384262
-
Lys
TTT
[ENA]
¡û
>W1910698683
MEOY01000743
Bacteroidota
Bacteroidetes bacterium RIFCSPHIGHO2_02_FULL_44_7 [MEOY]
3254
3327
+
Lys
TTT
[ENA]
¡û
>W1910728263
MGWL01000009
Bacteroidota
Fluviicola sp. RIFCSPHIGHO2_01_FULL_43_53 [MGWL]
311480
311555
+
Lys
TTT
[ENA]
¡û
>W1910728307
MGWN01000007
Bacteroidota
Fluviicola sp. RIFCSPHIGHO2_12_FULL_43_24 [MGWN]
308354
308429
+
Lys
TTT
[ENA]
¡û
>W1911749377
QWGE01000006
Bacteroidota
Pontibacter oryzae KIRAN [QWGE]
114012
114085
+
Lys
TTT
[ENA]
¡û
>W1911749378
QWGE01000006
Bacteroidota
Pontibacter oryzae KIRAN [QWGE]
114218
114291
+
Lys
TTT
[ENA]
¡û
>SRA1003308
SRR002326.380502
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
113
40
-
Lys
TTT
[SRA]
>C151047354
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
2745828
2745903
+
Lys
TTT
[Ensembl]
¡û
>C151047355
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
2914841
2914916
+
Lys
TTT
[Ensembl]
¡û
>C151047397
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
1549996
1549923
-
Lys
TTT
[Ensembl]
¡û
>C151047398
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
1546871
1546796
-
Lys
TTT
[Ensembl]
¡û
>C151047399
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
1530596
1530521
-
Lys
TTT
[Ensembl]
¡û
>C151071869
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
841839
841912
+
Lys
TTT
[Ensembl]
¡û
>C151071870
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
841979
842052
+
Lys
TTT
[Ensembl]
¡û
>W1710590110
FRAS01000009
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
65334
65261
-
Lys
TTT
[ENA]
¡û
>W1710590114
FRAS01000012
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
11139
11064
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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