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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235849 (102 seq.)
>W1711540095
MLZL01000013
Actinomycetota
Bifidobacterium animalis subsp. lactis [MLZL]
15316
15389
+
Arg
CCT
[ENA]
¡û
>W131232757
AUJM01000015
Actinomycetota
Bifidobacterium sp. AGR2158 [AUJM]
24802
24877
+
Arg
CCT
[ENA]
¡û
>WENV180217057
OBAR01000435
[OBAR] human gut metagenome; human gut
33700
33773
+
Arg
CCT
[ENA]
¢þ
>WENV180277592
OBHX01000342
[OBHX] metagenome; feces
36654
36727
+
Arg
CCT
[ENA]
¢þ
>WENV180332921
OBLF01000035
[OBLF] metagenome; feces
50442
50515
+
Arg
CCT
[ENA]
¢þ
>WENV180347476
OBLO01000396
[OBLO] metagenome; feces
32791
32718
-
Arg
CCT
[ENA]
¢þ
>WENV180443746
OBWY01052131
[OBWY] human gut metagenome; faeces
272
199
-
Arg
CCT
[ENA]
¢þ
>WENV180495878
OCAC01000044
[OCAC] human gut metagenome; faeces
43578
43651
+
Arg
CCT
[ENA]
¢þ
>WENV180598645
OCPN01000008
[OCPN] human gut metagenome; faeces
130765
130692
-
Arg
CCT
[ENA]
¢þ
>W08009145
ABOT01000003
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [ABOT]
51291
51364
+
Arg
CCT
[ENA]
¡û
>WENV181434217
OGDF01000454
[OGDF] human gut metagenome; human gut
29915
29988
+
Arg
CCT
[ENA]
¢þ
>WENV181439962
OGDN01000380
[OGDN] human gut metagenome; human gut
43117
43044
-
Arg
CCT
[ENA]
¢þ
>W141169162
AXVO01000015
Actinomycetota
Bifidobacterium choerinum DSM 20434 [AXVO]
15452
15527
+
Arg
CCT
[ENA]
¡û
>WENV181752664
OGQQ01010717
[OGQQ] human gut metagenome; faeces
380
453
+
Arg
CCT
[ENA]
¢þ
>W141258225
CBWX010000073
Actinomycetota
Bifidobacterium animalis subsp. lactis CECT 8145 [CBWX]
327819
327746
-
Arg
CCT
[ENA]
¡û
>WENV183132758
OLOB01006919
[OLOB] human gut metagenome; faeces
3690
3763
+
Arg
CCT
[ENA]
¢þ
>WENV183136029
OLOF01000008
[OLOF] human gut metagenome; faeces
50441
50514
+
Arg
CCT
[ENA]
¢þ
>WENV183144802
OLOL01008943
[OLOL] human gut metagenome; faeces
2832
2905
+
Arg
CCT
[ENA]
¢þ
>WENV183146864
OLOM01028829
[OLOM] human gut metagenome; faeces
900
827
-
Arg
CCT
[ENA]
¢þ
>WENV183147256
OLON01000031
[OLON] human gut metagenome; faeces
68315
68242
-
Arg
CCT
[ENA]
¢þ
>WENV183171269
OLPC01000014
[OLPC] human gut metagenome; faeces
130765
130692
-
Arg
CCT
[ENA]
¢þ
>WENV183174095
OLPE01000234
[OLPE] human gut metagenome; faeces
40549
40622
+
Arg
CCT
[ENA]
¢þ
>WENV183188460
OLPP01001021
[OLPP] human gut metagenome; faeces
7411
7338
-
Arg
CCT
[ENA]
¢þ
>WENV183215652
OLQG01007160
[OLQG] human gut metagenome; faeces
1182
1109
-
Arg
CCT
[ENA]
¢þ
>WENV183280896
OLSB01017682
[OLSB] human gut metagenome; faeces
943
870
-
Arg
CCT
[ENA]
¢þ
>WENV183291317
OLSI01000885
[OLSI] human gut metagenome; faeces
16413
16340
-
Arg
CCT
[ENA]
¢þ
>WENV183296364
OLSL01037908
[OLSL] human gut metagenome; faeces
953
880
-
Arg
CCT
[ENA]
¢þ
>WENV183298032
OLSM01027470
[OLSM] human gut metagenome; faeces
206
133
-
Arg
CCT
[ENA]
¢þ
>WENV183500268
OMGQ01005044
[OMGQ] human gut metagenome; human gut
1365
1438
+
Arg
CCT
[ENA]
¢þ
>C181023433
CP017098
Actinomycetota
Bifidobacterium animalis BL3 [CP017098]
1533876
1533949
+
Arg
CCT
-
¡û
>C181030111
CP018044
Actinomycetota
Bifidobacterium choerinum FMB-1 [CP018044]
172441
172516
+
Arg
CCT
-
¡û
>C181071774
CP022724
Actinomycetota
Bifidobacterium animalis subsp. lactis S7 [CP022724]
91669
91742
+
Arg
CCT
-
¡û
>C191057545
CP028460
Actinomycetota
Bifidobacterium animalis subsp. animalis CNCM I-4602 [CP028460]
1540444
1540517
+
Arg
CCT
-
¡û
>W141523693
JGYM01000007
Actinomycetota
Bifidobacterium animalis subsp. animalis [JGYM]
216244
216317
+
Arg
CCT
[ENA]
¡û
>C191073859
CP031154
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [CP031154]
1533522
1533595
+
Arg
CCT
-
¡û
>W141524092
JGYU01000010
Actinomycetota
Bifidobacterium choerinum [JGYU]
43497
43572
+
Arg
CCT
[ENA]
¡û
>W141524116
JGYV01000006
Actinomycetota
Bifidobacterium cuniculi [JGYV]
31093
31166
+
Arg
CCT
[ENA]
¡û
>C191078865
CP031703
Actinomycetota
Bifidobacterium animalis subsp. lactis IDCC4301 [CP031703]
638713
638640
-
Arg
CCT
-
¡û
>W141524886
JGZK01000017
Actinomycetota
Bifidobacterium reuteri DSM 23975 [JGZK]
219842
219915
+
Arg
CCT
[ENA]
¡û
>C191144112
CP035497
Actinomycetota
Bifidobacterium animalis 01 [CP035497]
1533666
1533739
+
Arg
CCT
-
¡û
>C09100995
CP001213
Actinomycetota
Bifidobacterium animalis subsp. lactis AD011 [CP001213]
659306
659379
+
Arg
CCT
[Ensembl]
¡û
>C09101052
CP001515
Actinomycetota
Bifidobacterium animalis subsp. lactis Bl-04 Bl-04; ATCC SD5219 [CP001515]
1528377
1528450
+
Arg
CCT
[Ensembl]
¡û
>C09101100
CP001606
Actinomycetota
Bifidobacterium animalis subsp. lactis DSM 10140 [CP001606]
1528095
1528168
+
Arg
CCT
[Ensembl]
¡û
>W1910179791
BJKG01000013
Actinomycetota
Bifidobacterium animalis J063 [BJKG]
51326
51399
+
Arg
CCT
[ENA]
¡û
>W1910179795
BJKH01000001
Actinomycetota
Bifidobacterium animalis J218 [BJKH]
51379
51452
+
Arg
CCT
[ENA]
¡û
>W1910179890
BJKI01000014
Actinomycetota
Bifidobacterium animalis J231 [BJKI]
51329
51402
+
Arg
CCT
[ENA]
¡û
>W1910342703
FTRE01000003
Actinomycetota
Bifidobacterium animalis [FTRE]
130909
130836
-
Arg
CCT
[ENA]
¡û
>W1910343322
FTRP01000003
Actinomycetota
Bifidobacterium animalis [FTRP]
130909
130836
-
Arg
CCT
[ENA]
¡û
>C141002656
CP003941
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27673 [CP003941]
1538888
1538961
+
Arg
CCT
[Ensembl]
¡û
>W1910814843
MVOG01000007
Actinomycetota
Bifidobacterium italicum 70 [MVOG]
15910
15985
+
Arg
CCT
[ENA]
¡û
>W1910910836
NHMR02000002
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [NHMR]
48793
48866
+
Arg
CCT
[ENA]
¡û
>W1910923038
NIGQ01000003
Actinomycetota
Bifidobacterium animalis subsp. lactis LMG P-17502_2 [NIGQ]
130744
130671
-
Arg
CCT
[ENA]
¡û
>W1910923082
NIGR01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis LMG P-17502_1 [NIGR]
51512
51585
+
Arg
CCT
[ENA]
¡û
>W1911079597
NMYC01000003
Actinomycetota
Bifidobacterium anseris 72 [NMYC]
55063
55138
+
Arg
CCT
[ENA]
¡û
>W1911768208
QXGI01000005
Actinomycetota
Bifidobacterium castoris 2020B [QXGI]
30676
30751
+
Arg
CCT
[ENA]
¡û
>W1810084975
PESQ01000005
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [PESQ]
51362
51435
+
Arg
CCT
[ENA]
¡û
>W1810121976
PHUS01000006
Actinomycetota
Bifidobacterium animalis subsp. lactis BM 25 [PHUS]
130797
130724
-
Arg
CCT
[ENA]
¡û
>W1810541594
QDIK01000004
Actinomycetota
Bifidobacterium animalis subsp. lactis DS28_2 [QDIK]
130859
130786
-
Arg
CCT
[ENA]
¡û
>W1810541645
QDIL01000004
Actinomycetota
Bifidobacterium animalis subsp. lactis DS27_2 [QDIL]
130909
130836
-
Arg
CCT
[ENA]
¡û
>W1810541739
QDIN01000003
Actinomycetota
Bifidobacterium animalis subsp. lactis DS24_2 [QDIN]
130909
130836
-
Arg
CCT
[ENA]
¡û
>W1810541753
QDIO01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis DS23_2 [QDIO]
36286
36359
+
Arg
CCT
[ENA]
¡û
>W1810541839
QDIP01000004
Actinomycetota
Bifidobacterium animalis DS2_2 [QDIP]
51197
51270
+
Arg
CCT
[ENA]
¡û
>W1810541943
QDIR01000005
Actinomycetota
Bifidobacterium animalis DS15_2 [QDIR]
51459
51532
+
Arg
CCT
[ENA]
¡û
>W1810542040
QDIT01000003
Actinomycetota
Bifidobacterium animalis DS11_2 [QDIT]
51630
51703
+
Arg
CCT
[ENA]
¡û
>W1810542089
QDIU01000003
Actinomycetota
Bifidobacterium animalis DS1_2 [QDIU]
51676
51749
+
Arg
CCT
[ENA]
¡û
>W1810542098
QDIV01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis CF3_2 [QDIV]
28266
28193
-
Arg
CCT
[ENA]
¡û
>W1810542296
QDIZ01000003
Actinomycetota
Bifidobacterium animalis DS20_2 [QDIZ]
50869
50942
+
Arg
CCT
[ENA]
¡û
>W1810837825
QSSU01000005
Actinomycetota
Bifidobacterium animalis TF04-14 [QSSU]
51341
51414
+
Arg
CCT
[ENA]
¡û
>W1810839898
QSUF01000005
Actinomycetota
Bifidobacterium animalis OM05-7AA [QSUF]
51281
51354
+
Arg
CCT
[ENA]
¡û
>C151026475
CP007522
Actinomycetota
Bifidobacterium animalis subsp. lactis KLDS2.0603 [CP007522]
1527841
1527914
+
Arg
CCT
[Ensembl]
¡û
>C151033696
CP007755
Actinomycetota
Bifidobacterium animalis RH [CP007755]
1523008
1523081
+
Arg
CCT
[Ensembl]
¡û
>C151042218
CP009045
Actinomycetota
Bifidobacterium animalis subsp. lactis BF052 [CP009045]
1528012
1528085
+
Arg
CCT
[Ensembl]
¡û
>C151068789
CP010433
Actinomycetota
Bifidobacterium animalis A6 [CP010433]
1533669
1533742
+
Arg
CCT
[Ensembl]
¡û
>C10101289
CP001853
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [CP001853]
225623
225696
+
Arg
CCT
[Ensembl]
¡û
>C10101356
CP001892
Actinomycetota
Bifidobacterium animalis subsp. lactis V9 [CP001892]
1533664
1533737
+
Arg
CCT
[Ensembl]
¡û
>C11101912
CP003039
Actinomycetota
Bifidobacterium animalis subsp. lactis BLC1 [CP003039]
1533554
1533627
+
Arg
CCT
[Ensembl]
¡û
>C11101961
CP002915
Actinomycetota
Bifidobacterium animalis subsp. lactis CNCM I-2494 [CP002915]
1533011
1533084
+
Arg
CCT
[Ensembl]
¡û
>C121002619
CP002567
Actinomycetota
Bifidobacterium animalis subsp. animalis ATCC 25527 [CP002567]
1540580
1540653
+
Arg
CCT
[Ensembl]
¡û
>C121013655
CP003497
Actinomycetota
Bifidobacterium animalis subsp. lactis B420 [CP003497]
1528212
1528285
+
Arg
CCT
[Ensembl]
¡û
>C121013704
CP003498
Actinomycetota
Bifidobacterium animalis subsp. lactis Bi-07 [CP003498]
1528433
1528506
+
Arg
CCT
[Ensembl]
¡û
>W1610027711
AWFK01000009
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0483 [AWFK]
29690
29763
+
Arg
CCT
[ENA]
¡û
>W1610027772
AWFL01000010
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27536 [AWFL]
130502
130429
-
Arg
CCT
[ENA]
¡û
>W1610027824
AWFM01000010
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27674 [AWFM]
48987
48914
-
Arg
CCT
[ENA]
¡û
>W1610027879
AWFN01000007
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0499 [AWFN]
48746
48819
+
Arg
CCT
[ENA]
¡û
>W1610027915
AWFO01000007
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 1489 [AWFO]
48878
48951
+
Arg
CCT
[ENA]
¡û
>W1610027978
AWFP01000014
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27673 [AWFP]
40129
40202
+
Arg
CCT
[ENA]
¡û
>W1610028025
AWFQ01000004
Actinomycetota
Bifidobacterium animalis subsp. animalis ATCC 27672 [AWFQ]
48542
48615
+
Arg
CCT
[ENA]
¡û
>W1610083149
CBUQ010000008
Actinomycetota
Bifidobacterium animalis subsp. animalis IM386 [CBUQ]
223230
223157
-
Arg
CCT
[ENA]
¡û
>W121031698
AHGW01000005
Actinomycetota
Bifidobacterium animalis subsp. lactis BS 01 [AHGW]
227904
227977
+
Arg
CCT
[ENA]
¡û
>C131012144
CP004053
Actinomycetota
Bifidobacterium animalis subsp. lactis Bl12 [CP004053]
1528003
1528076
+
Arg
CCT
[Ensembl]
¡û
>W1610518589
JDTM01000007
Actinomycetota
Bifidobacterium pullorum DSM 6531 = LMG 14934 [JDTM]
73334
73259
-
Arg
CCT
[ENA]
¡û
>W1610519590
JDUI01000008
Actinomycetota
Bifidobacterium pullorum DSM 20433 [JDUI]
101011
101086
+
Arg
CCT
[ENA]
¡û
>W1610519618
JDUJ01000003
Actinomycetota
Bifidobacterium choerinum DSM 20434 [JDUJ]
66631
66556
-
Arg
CCT
[ENA]
¡û
>W1610519738
JDUL01000067
Actinomycetota
Bifidobacterium cuniculi DSM 20435 [JDUL]
7172
7099
-
Arg
CCT
[ENA]
¡û
>W1710023919
AWFK01000009
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0483 [AWFK]
29690
29763
+
Arg
CCT
[ENA]
¡û
>W1710023989
AWFN01000007
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0499 [AWFN]
48746
48819
+
Arg
CCT
[ENA]
¡û
>W1710024025
AWFO01000007
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 1489 [AWFO]
48878
48951
+
Arg
CCT
[ENA]
¡û
>W1710088269
CBUQ010000008
Actinomycetota
Bifidobacterium animalis subsp. animalis IM386 [CBUQ]
223230
223157
-
Arg
CCT
[ENA]
¡û
>W1710614109
JDTM01000007
Actinomycetota
Bifidobacterium pullorum DSM 6531 = LMG 14934 [JDTM]
73334
73259
-
Arg
CCT
[ENA]
¡û
>W1710615045
JDUI01000008
Actinomycetota
Bifidobacterium pullorum DSM 20433 [JDUI]
101011
101086
+
Arg
CCT
[ENA]
¡û
>W1710615073
JDUJ01000003
Actinomycetota
Bifidobacterium choerinum DSM 20434 [JDUJ]
66631
66556
-
Arg
CCT
[ENA]
¡û
>W1710615193
JDUL01000067
Actinomycetota
Bifidobacterium cuniculi DSM 20435 [JDUL]
7172
7099
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK