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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235850 (124 seq.)
>W131217511
ATWW01000019
Actinomycetota
Bifidobacterium pseudolongum AGR2145 [ATWW]
15184
15259
+
Arg
CCG
[ENA]
¡û
>W1711540098
MLZL01000015
Actinomycetota
Bifidobacterium animalis subsp. lactis [MLZL]
11498
11423
-
Arg
CCG
[ENA]
¡û
>WENV180217491
OBAR01001963
[OBAR] human gut metagenome; human gut
11062
10987
-
Arg
CCG
[ENA]
¢þ
>WENV180278680
OBHX01006850
[OBHX] metagenome; feces
815
740
-
Arg
CCG
[ENA]
¢þ
>WENV180333198
OBLF01000327
[OBLF] metagenome; feces
44333
44408
+
Arg
CCG
[ENA]
¢þ
>WENV180347654
OBLO01000865
[OBLO] metagenome; feces
11062
10987
-
Arg
CCG
[ENA]
¢þ
>WENV180495916
OCAC01000127
[OCAC] human gut metagenome; faeces
11062
10987
-
Arg
CCG
[ENA]
¢þ
>WENV180598824
OCPN01000338
[OCPN] human gut metagenome; faeces
11062
10987
-
Arg
CCG
[ENA]
¢þ
>W08009156
ABOT01000008
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [ABOT]
94637
94712
+
Arg
CCG
[ENA]
¡û
>WENV181251510
OFFO01018211
[OFFO] mouse gut metagenome; faeces
1087
1012
-
Arg
CCG
[ENA]
¢þ
>WENV181255836
OFFS01042279
[OFFS] mouse gut metagenome; faeces
54
129
+
Arg
CCG
[ENA]
¢þ
>WENV181273746
OFGH01007944
[OFGH] mouse gut metagenome; faeces
899
974
+
Arg
CCG
[ENA]
¢þ
>WENV181274891
OFGI01013006
[OFGI] mouse gut metagenome; faeces
862
937
+
Arg
CCG
[ENA]
¢þ
>WENV181301201
OFHN01055540
[OFHN] mouse gut metagenome; faeces
6
81
+
Arg
CCG
[ENA]
¢þ
>WENV181435854
OGDF01006993
[OGDF] human gut metagenome; human gut
5478
5553
+
Arg
CCG
[ENA]
¢þ
>WENV181440345
OGDN01000906
[OGDN] human gut metagenome; human gut
11059
10984
-
Arg
CCG
[ENA]
¢þ
>WENV181752891
OGQQ01026043
[OGQQ] human gut metagenome; faeces
348
273
-
Arg
CCG
[ENA]
¢þ
>WENV181903701
OGXX01002399
[OGXX] human gut metagenome; faeces
15310
15235
-
Arg
CCG
[ENA]
¢þ
>WENV182314778
OHYA01037122
[OHYA] human gut metagenome; feces
417
492
+
Arg
CCG
[ENA]
¢þ
>W141258180
CBWX010000073
Actinomycetota
Bifidobacterium animalis subsp. lactis CECT 8145 [CBWX]
184727
184802
+
Arg
CCG
[ENA]
¡û
>WENV182764385
OJRP01012423
[OJRP] human gut metagenome; stool sample
1020
945
-
Arg
CCG
[ENA]
¢þ
>WENV183106617
OLNL01019617
[OLNL] human gut metagenome; faeces
805
880
+
Arg
CCG
[ENA]
¢þ
>WENV183133142
OLOB01028510
[OLOB] human gut metagenome; faeces
676
601
-
Arg
CCG
[ENA]
¢þ
>WENV183136287
OLOF01000529
[OLOF] human gut metagenome; faeces
4583
4658
+
Arg
CCG
[ENA]
¢þ
>WENV183147004
OLOM01056194
[OLOM] human gut metagenome; faeces
435
510
+
Arg
CCG
[ENA]
¢þ
>WENV183147665
OLON01001168
[OLON] human gut metagenome; faeces
4584
4659
+
Arg
CCG
[ENA]
¢þ
>WENV183171933
OLPC01002082
[OLPC] human gut metagenome; faeces
11059
10984
-
Arg
CCG
[ENA]
¢þ
>WENV183174439
OLPE01001212
[OLPE] human gut metagenome; faeces
11059
10984
-
Arg
CCG
[ENA]
¢þ
>WENV183182664
OLPK01000724
[OLPK] human gut metagenome; faeces
15451
15526
+
Arg
CCG
[ENA]
¢þ
>WENV183188631
OLPP01006146
[OLPP] human gut metagenome; faeces
760
685
-
Arg
CCG
[ENA]
¢þ
>WENV183215918
OLQG01041870
[OLQG] human gut metagenome; faeces
147
72
-
Arg
CCG
[ENA]
¢þ
>WENV183280842
OLSB01014657
[OLSB] human gut metagenome; faeces
99
24
-
Arg
CCG
[ENA]
¢þ
>WENV183291406
OLSI01001513
[OLSI] human gut metagenome; faeces
11059
10984
-
Arg
CCG
[ENA]
¢þ
>WENV183297660
OLSM01006362
[OLSM] human gut metagenome; faeces
4573
4498
-
Arg
CCG
[ENA]
¢þ
>WENV183484462
OMFO01058455
[OMFO] human gut metagenome; feces
411
486
+
Arg
CCG
[ENA]
¢þ
>WENV183548918
OOAY01005801
[OOAY] human gut metagenome; human gut
15
90
+
Arg
CCG
[ENA]
¢þ
>WENV183792791
PPYF01463042
[PPYF] human gut metagenome; stool from patient with Crohn's disease
6534
6609
+
Arg
CCG
[ENA]
¢þ
>WENV170687029
LFRM01173832
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
521
446
-
Arg
CCG
[ENA]
¢þ
>C181023438
CP017098
Actinomycetota
Bifidobacterium animalis BL3 [CP017098]
1676998
1676923
-
Arg
CCG
-
¡û
>C181027165
CP017695
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum DSM 20092 [CP017695]
532795
532870
+
Arg
CCG
-
¡û
>C181068161
CP022544
Actinomycetota
Bifidobacterium pseudolongum UMB-MBP-01 [CP022544]
1711103
1711028
-
Arg
CCG
-
¡û
>C181071818
CP022724
Actinomycetota
Bifidobacterium animalis subsp. lactis S7 [CP022724]
234788
234713
-
Arg
CCG
-
¡û
>C191057550
CP028460
Actinomycetota
Bifidobacterium animalis subsp. animalis CNCM I-4602 [CP028460]
1679049
1678974
-
Arg
CCG
-
¡û
>W141523697
JGYM01000007
Actinomycetota
Bifidobacterium animalis subsp. animalis [JGYM]
354854
354779
-
Arg
CCG
[ENA]
¡û
>C191073864
CP031154
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [CP031154]
1676643
1676568
-
Arg
CCG
-
¡û
>W141524111
JGYV01000001
Actinomycetota
Bifidobacterium cuniculi [JGYV]
744180
744253
+
Arg
CCG
[ENA]
¡û
>C191078826
CP031703
Actinomycetota
Bifidobacterium animalis subsp. lactis IDCC4301 [CP031703]
495592
495667
+
Arg
CCG
-
¡û
>W141524651
JGZG01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum [JGZG]
173592
173517
-
Arg
CCG
[ENA]
¡û
>W141524741
JGZH01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum [JGZH]
64937
64862
-
Arg
CCG
[ENA]
¡û
>C191144117
CP035497
Actinomycetota
Bifidobacterium animalis 01 [CP035497]
1676787
1676712
-
Arg
CCG
-
¡û
>W141559181
JHWN01000007
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum DSM 20092 [JHWN]
14001
13926
-
Arg
CCG
[ENA]
¡û
>C09101020
CP001213
Actinomycetota
Bifidobacterium animalis subsp. lactis AD011 [CP001213]
802425
802350
-
Arg
CCG
[Ensembl]
¡û
>C09101057
CP001515
Actinomycetota
Bifidobacterium animalis subsp. lactis Bl-04 Bl-04; ATCC SD5219 [CP001515]
1671498
1671423
-
Arg
CCG
[Ensembl]
¡û
>C09101105
CP001606
Actinomycetota
Bifidobacterium animalis subsp. lactis DSM 10140 [CP001606]
1671216
1671141
-
Arg
CCG
[Ensembl]
¡û
>W1910179768
BJKG01000006
Actinomycetota
Bifidobacterium animalis J063 [BJKG]
11115
11040
-
Arg
CCG
[ENA]
¡û
>W1910179798
BJKH01000008
Actinomycetota
Bifidobacterium animalis J218 [BJKH]
11109
11034
-
Arg
CCG
[ENA]
¡û
>W1910179886
BJKI01000012
Actinomycetota
Bifidobacterium animalis J231 [BJKI]
11115
11040
-
Arg
CCG
[ENA]
¡û
>W1910342710
FTRE01000006
Actinomycetota
Bifidobacterium animalis [FTRE]
11134
11059
-
Arg
CCG
[ENA]
¡û
>W1910343329
FTRP01000006
Actinomycetota
Bifidobacterium animalis [FTRP]
11134
11059
-
Arg
CCG
[ENA]
¡û
>C141002661
CP003941
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27673 [CP003941]
1707604
1707529
-
Arg
CCG
[Ensembl]
¡û
>W1910910848
NHMR02000002
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [NHMR]
239910
239835
-
Arg
CCG
[ENA]
¡û
>W1910923047
NIGQ01000007
Actinomycetota
Bifidobacterium animalis subsp. lactis LMG P-17502_2 [NIGQ]
94588
94663
+
Arg
CCG
[ENA]
¡û
>W1910923097
NIGR01000007
Actinomycetota
Bifidobacterium animalis subsp. lactis LMG P-17502_1 [NIGR]
11040
10965
-
Arg
CCG
[ENA]
¡û
>W1810049125
PCGZ01000004
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1524B [PCGZ]
9298
9223
-
Arg
CCG
[ENA]
¡û
>W1810049191
PCHA01000028
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1747B [PCHA]
14646
14571
-
Arg
CCG
[ENA]
¡û
>W1810049205
PCHB01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1744B [PCHB]
13630
13555
-
Arg
CCG
[ENA]
¡û
>W1810049297
PCHC01000015
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1619B [PCHC]
27340
27265
-
Arg
CCG
[ENA]
¡û
>W1810049350
PCHD01000015
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1734B [PCHD]
15020
14945
-
Arg
CCG
[ENA]
¡û
>W1810049375
PCHE01000004
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1691B [PCHE]
61692
61767
+
Arg
CCG
[ENA]
¡û
>W1810049457
PCHF01000006
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum 1595B [PCHF]
175610
175535
-
Arg
CCG
[ENA]
¡û
>W1810049502
PCHG01000019
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1549B [PCHG]
13771
13696
-
Arg
CCG
[ENA]
¡û
>W1810049558
PCHH01000005
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1520B [PCHH]
16370
16295
-
Arg
CCG
[ENA]
¡û
>W1810049605
PCHI01000010
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum 1370B [PCHI]
190218
190143
-
Arg
CCG
[ENA]
¡û
>W1810084992
PESQ01000013
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [PESQ]
11103
11028
-
Arg
CCG
[ENA]
¡û
>W1810122000
PHUS01000016
Actinomycetota
Bifidobacterium animalis subsp. lactis BM 25 [PHUS]
5483
5558
+
Arg
CCG
[ENA]
¡û
>W1810541606
QDIK01000013
Actinomycetota
Bifidobacterium animalis subsp. lactis DS28_2 [QDIK]
4610
4685
+
Arg
CCG
[ENA]
¡û
>W1810541652
QDIL01000007
Actinomycetota
Bifidobacterium animalis subsp. lactis DS27_2 [QDIL]
11131
11056
-
Arg
CCG
[ENA]
¡û
>W1810541749
QDIN01000007
Actinomycetota
Bifidobacterium animalis subsp. lactis DS24_2 [QDIN]
11131
11056
-
Arg
CCG
[ENA]
¡û
>W1810541793
QDIO01000063
Actinomycetota
Bifidobacterium animalis subsp. lactis DS23_2 [QDIO]
608
683
+
Arg
CCG
[ENA]
¡û
>W1810541846
QDIP01000007
Actinomycetota
Bifidobacterium animalis DS2_2 [QDIP]
11131
11056
-
Arg
CCG
[ENA]
¡û
>W1810541945
QDIR01000006
Actinomycetota
Bifidobacterium animalis DS15_2 [QDIR]
94759
94834
+
Arg
CCG
[ENA]
¡û
>W1810542047
QDIT01000006
Actinomycetota
Bifidobacterium animalis DS11_2 [QDIT]
11131
11056
-
Arg
CCG
[ENA]
¡û
>W1810542095
QDIU01000006
Actinomycetota
Bifidobacterium animalis DS1_2 [QDIU]
94759
94834
+
Arg
CCG
[ENA]
¡û
>W1810542142
QDIV01000137
Actinomycetota
Bifidobacterium animalis subsp. lactis CF3_2 [QDIV]
11058
10983
-
Arg
CCG
[ENA]
¡û
>W1810542334
QDIZ01000009
Actinomycetota
Bifidobacterium animalis DS20_2 [QDIZ]
94541
94616
+
Arg
CCG
[ENA]
¡û
>W1810813837
QRZV01000007
Actinomycetota
Bifidobacterium pseudolongum AF13-3LB [QRZV]
15891
15816
-
Arg
CCG
[ENA]
¡û
>W1810837835
QSSU01000012
Actinomycetota
Bifidobacterium animalis TF04-14 [QSSU]
5457
5532
+
Arg
CCG
[ENA]
¡û
>W1810839919
QSUF01000013
Actinomycetota
Bifidobacterium animalis OM05-7AA [QSUF]
5478
5553
+
Arg
CCG
[ENA]
¡û
>C151024247
CP007457
Actinomycetota
Bifidobacterium pseudolongum PV8-2 [CP007457]
1776048
1775973
-
Arg
CCG
[Ensembl]
¡û
>C151026480
CP007522
Actinomycetota
Bifidobacterium animalis subsp. lactis KLDS2.0603 [CP007522]
1670961
1670886
-
Arg
CCG
[Ensembl]
¡û
>C151033701
CP007755
Actinomycetota
Bifidobacterium animalis RH [CP007755]
1666129
1666054
-
Arg
CCG
[Ensembl]
¡û
>C151042223
CP009045
Actinomycetota
Bifidobacterium animalis subsp. lactis BF052 [CP009045]
1671133
1671058
-
Arg
CCG
[Ensembl]
¡û
>C151068794
CP010433
Actinomycetota
Bifidobacterium animalis A6 [CP010433]
1676790
1676715
-
Arg
CCG
[Ensembl]
¡û
>C10101334
CP001853
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [CP001853]
368704
368629
-
Arg
CCG
[Ensembl]
¡û
>C10101361
CP001892
Actinomycetota
Bifidobacterium animalis subsp. lactis V9 [CP001892]
1676785
1676710
-
Arg
CCG
[Ensembl]
¡û
>C11101917
CP003039
Actinomycetota
Bifidobacterium animalis subsp. lactis BLC1 [CP003039]
1676676
1676601
-
Arg
CCG
[Ensembl]
¡û
>C11101966
CP002915
Actinomycetota
Bifidobacterium animalis subsp. lactis CNCM I-2494 [CP002915]
1676119
1676044
-
Arg
CCG
[Ensembl]
¡û
>C121002624
CP002567
Actinomycetota
Bifidobacterium animalis subsp. animalis ATCC 25527 [CP002567]
1679185
1679110
-
Arg
CCG
[Ensembl]
¡û
>C121013660
CP003497
Actinomycetota
Bifidobacterium animalis subsp. lactis B420 [CP003497]
1671335
1671260
-
Arg
CCG
[Ensembl]
¡û
>C121013709
CP003498
Actinomycetota
Bifidobacterium animalis subsp. lactis Bi-07 [CP003498]
1671554
1671479
-
Arg
CCG
[Ensembl]
¡û
>C161087472
CP015407
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [CP015407]
158630
158555
-
Arg
CCG
[Ensembl]
¡û
>W1610027701
AWFK01000006
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0483 [AWFK]
43487
43412
-
Arg
CCG
[ENA]
¡û
>W1610027770
AWFL01000009
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27536 [AWFL]
94563
94638
+
Arg
CCG
[ENA]
¡û
>W1610027798
AWFM01000003
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27674 [AWFM]
11024
10949
-
Arg
CCG
[ENA]
¡û
>W1610027874
AWFN01000005
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0499 [AWFN]
78243
78318
+
Arg
CCG
[ENA]
¡û
>W1610027898
AWFO01000005
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 1489 [AWFO]
84649
84724
+
Arg
CCG
[ENA]
¡û
>W1610027980
AWFP01000016
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27673 [AWFP]
86807
86882
+
Arg
CCG
[ENA]
¡û
>W1610028028
AWFQ01000004
Actinomycetota
Bifidobacterium animalis subsp. animalis ATCC 27672 [AWFQ]
216331
216256
-
Arg
CCG
[ENA]
¡û
>W1610058891
BCAE01000104
Actinomycetota
Actinobacteria bacterium UC5.1-1B11 [BCAE]
2380
2305
-
Arg
CCG
[ENA]
¡û
>W1610083148
CBUQ010000008
Actinomycetota
Bifidobacterium animalis subsp. animalis IM386 [CBUQ]
84643
84718
+
Arg
CCG
[ENA]
¡û
>W121031702
AHGW01000005
Actinomycetota
Bifidobacterium animalis subsp. lactis BS 01 [AHGW]
371025
370950
-
Arg
CCG
[ENA]
¡û
>C131012149
CP004053
Actinomycetota
Bifidobacterium animalis subsp. lactis Bl12 [CP004053]
1671124
1671049
-
Arg
CCG
[Ensembl]
¡û
>W1610519014
JDTV01000010
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum DSM 20092 [JDTV]
13858
13783
-
Arg
CCG
[ENA]
¡û
>W1610519207
JDTZ01000010
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum DSM 20099 [JDTZ]
71958
72033
+
Arg
CCG
[ENA]
¡û
>W1610519744
JDUL01000105
Actinomycetota
Bifidobacterium cuniculi DSM 20435 [JDUL]
5793
5866
+
Arg
CCG
[ENA]
¡û
>WENV085356
BABC01000885
Gut microbiome of Human (healthy human sample In-B, Infant, Male)
153
78
-
Arg
CCG
[ENA]
>W1710023909
AWFK01000006
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0483 [AWFK]
43487
43412
-
Arg
CCG
[ENA]
¡û
>W1710023984
AWFN01000005
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0499 [AWFN]
78243
78318
+
Arg
CCG
[ENA]
¡û
>W1710024008
AWFO01000005
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 1489 [AWFO]
84649
84724
+
Arg
CCG
[ENA]
¡û
>W1710055650
BCAE01000104
Actinomycetota
Actinobacteria bacterium UC5.1-1B11 [BCAE]
2380
2305
-
Arg
CCG
[ENA]
¡û
>W1710088268
CBUQ010000008
Actinomycetota
Bifidobacterium animalis subsp. animalis IM386 [CBUQ]
84643
84718
+
Arg
CCG
[ENA]
¡û
>W1710614469
JDTV01000010
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum DSM 20092 [JDTV]
13858
13783
-
Arg
CCG
[ENA]
¡û
>W1710614662
JDTZ01000010
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum DSM 20099 [JDTZ]
71958
72033
+
Arg
CCG
[ENA]
¡û
>W1710615199
JDUL01000105
Actinomycetota
Bifidobacterium cuniculi DSM 20435 [JDUL]
5793
5866
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
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Direction
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Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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