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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235856 (46 seq.)
>W1710944358
LOQS01000006
Actinomycetota
Corynebacterium glutamicum [LOQS]
91744
91817
+
Lys
TTT
[ENA]
¡û
>W1710944469
LOQT01000035
Actinomycetota
Corynebacterium glutamicum [LOQT]
11176
11103
-
Lys
TTT
[ENA]
¡û
>W1710944481
LOQV01000009
Actinomycetota
Corynebacterium glutamicum [LOQV]
275928
276001
+
Lys
TTT
[ENA]
¡û
>W1710944593
LOQW01000027
Actinomycetota
Corynebacterium glutamicum [LOQW]
15422
15495
+
Lys
TTT
[ENA]
¡û
>W1710944649
LOQX01000046
Actinomycetota
Corynebacterium glutamicum [LOQX]
11023
10950
-
Lys
TTT
[ENA]
¡û
>W1710944688
LOQY01000085
Actinomycetota
Corynebacterium glutamicum [LOQY]
92574
92647
+
Lys
TTT
[ENA]
¡û
>C171074414
CP018175
Actinomycetota
Corynebacterium glutamicum XV [CP018175]
2712519
2712446
-
Lys
TTT
-
¡û
>C171074418
CP018175
Actinomycetota
Corynebacterium glutamicum XV [CP018175]
2699771
2699698
-
Lys
TTT
-
¡û
>C171111069
CP020658
Actinomycetota
Corynebacterium glutamicum TQ2223 [CP020658]
34866
34939
+
Lys
TTT
-
¡û
>W131156394
AQPS01000021
Actinomycetota
Corynebacterium glutamicum MT [AQPS]
17081
17154
+
Lys
TTT
[ENA]
¡û
>W131215665
ATVF01000001
Actinomycetota
Corynebacterium callunae DSM 20147 [ATVF]
376188
376263
+
Lys
TTT
[ENA]
¡û
>C005691
BA000036
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [BA000036]
2729208
2729136
-
Lys
TTT
[Ensembl]
¡û
>C005751
BX927147
Actinomycetota
Corynebacterium glutamicum [BX927147]
2700878
2700806
-
Lys
TTT
[Ensembl]
¡û
>C005811
AP009044
Actinomycetota
Corynebacterium glutamicum R [AP009044]
2728200
2728128
-
Lys
TTT
[Ensembl]
¡û
>W141026615
AKXP01000031
Actinomycetota
Corynebacterium glutamicum Z188 [AKXP]
11018
10945
-
Lys
TTT
[ENA]
¡û
>WENV180504587
OCAN01009980
[OCAN] human gut metagenome; faeces
132
205
+
Lys
TTT
[ENA]
¢þ
>C181001618
AP017369
Actinomycetota
Corynebacterium suranareeae N24 [AP017369]
2916779
2916706
-
Lys
TTT
-
¡û
>C181002232
AP017557
Actinomycetota
Corynebacterium glutamicum AJ1511 [AP017557]
2679578
2679505
-
Lys
TTT
-
¡û
>C181029640
CP017995
Actinomycetota
Corynebacterium glutamicum C1 [CP017995]
2274665
2274592
-
Lys
TTT
-
¡û
>C181064184
CP022394
Actinomycetota
Corynebacterium glutamicum WM001 [CP022394]
2231594
2231521
-
Lys
TTT
-
¡û
>C181069979
CP022614
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [CP022614]
2675774
2675701
-
Lys
TTT
-
¡û
>C181118441
CP025533
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [CP025533]
2736431
2736358
-
Lys
TTT
-
¡û
>C181118515
CP025534
Actinomycetota
Corynebacterium glutamicum HA [CP025534]
200965
200892
-
Lys
TTT
-
¡û
>W141800913
JPDH01000164
Actinomycetota
Corynebacterium glutamicum crenatum [JPDH]
12339
12412
+
Lys
TTT
[ENA]
¡û
>W1910001255
APJJ01000026
Actinomycetota
Corynebacterium glutamicum ZL-2 [APJJ]
69277
69204
-
Lys
TTT
[ENA]
¡û
>C141004156
CP005959
Actinomycetota
Corynebacterium glutamicum MB001 [CP005959]
2497421
2497348
-
Lys
TTT
[Ensembl]
¡û
>W1910573053
JOLA01000049
Actinomycetota
Corynebacterium glutamicum 1006 [JOLA]
70293
70366
+
Lys
TTT
[ENA]
¡û
>C151033011
CP007722
Actinomycetota
Corynebacterium glutamicum ATCC 21831 [CP007722]
2598115
2598042
-
Lys
TTT
[Ensembl]
¡û
>C151033071
CP007724
Actinomycetota
Corynebacterium glutamicum AR1 [CP007724]
2567710
2567637
-
Lys
TTT
[Ensembl]
¡û
>C151045689
CP009220
Actinomycetota
Corynebacterium deserti GIMN1.010 [CP009220]
2420739
2420664
-
Lys
TTT
-
¡û
>C151069907
CP010451
Actinomycetota
Corynebacterium glutamicum B253 [CP010451]
2595370
2595297
-
Lys
TTT
[Ensembl]
¡û
>C151079614
CP011309
Actinomycetota
[Brevibacterium] flavum ATCC 15168 [CP011309]
2684572
2684499
-
Lys
TTT
[Ensembl]
¡û
>W1511500712
JXBH01000031
Actinomycetota
Corynebacterium glutamicum SYPS-062 [JXBH]
11347
11274
-
Lys
TTT
[ENA]
¡û
>W1511524464
JYEG01000011
Actinomycetota
Corynebacterium glutamicum SYPS-062-33a [JYEG]
92744
92817
+
Lys
TTT
[ENA]
¡û
>W11176912
AFYA01000031
Actinomycetota
Corynebacterium glutamicum S9114 [AFYA]
15388
15461
+
Lys
TTT
[ENA]
¡û
>C161003054
CP004046
Actinomycetota
[Brevibacterium] flavum ZL-1 [CP004046]
2718662
2718589
-
Lys
TTT
-
¡û
>C161003113
CP004062
Actinomycetota
Corynebacterium glutamicum ZL-6 [CP004062]
2710168
2710095
-
Lys
TTT
-
¡û
>C161040457
CP012194
Actinomycetota
Corynebacterium glutamicum CP [CP012194]
2723854
2723781
-
Lys
TTT
-
¡û
>C161081142
CP014984
Actinomycetota
Corynebacterium glutamicum YI [CP014984]
2670037
2669964
-
Lys
TTT
-
¡û
>C161096085
CP016335
Actinomycetota
Corynebacterium glutamicum ATCC 13869 [CP016335]
2679573
2679500
-
Lys
TTT
-
¡û
>W121016282
AGQQ01000034
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [AGQQ]
446819
446892
+
Lys
TTT
[ENA]
¡û
>C131012039
CP004047
Actinomycetota
Corynebacterium glutamicum SCgG1 [CP004047]
2747908
2747835
-
Lys
TTT
[Ensembl]
¡û
>C131012099
CP004048
Actinomycetota
Corynebacterium glutamicum SCgG2 [CP004048]
2747907
2747834
-
Lys
TTT
[Ensembl]
¡û
>C131013487
CP004354
Actinomycetota
Corynebacterium callunae DSM 20147 [CP004354]
2327207
2327132
-
Lys
TTT
[Ensembl]
¡û
>C131019764
HE802067
Actinomycetota
Corynebacterium glutamicum K051 ATCC 13032 [HE802067]
2729207
2729134
-
Lys
TTT
[Ensembl]
¡û
>W1710039885
BAYH01000034
Actinomycetota
Corynebacterium glutamicum [BAYH]
11411
11338
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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